Variant report

Variant	rs2095591
Chromosome Location	chr10:97780607-97780608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97777689..97783074-chr10:97800891..97805801,6	MCF-7	breast:
2	chr10:97774224..97779073-chr10:97779933..97783728,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97778477-97781325	ENSG00000226688.1

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10748652	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748653	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10748656	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10786257	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10786258	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10786259	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10786260	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10786261	0.99[ASN][1000 genomes]
rs10882710	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1414921	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1414922	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2901892	0.85[AFR][1000 genomes]
rs3748224	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3961945	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4145209	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4918984	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6584044	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6584045	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6584046	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6584048	0.80[ASN][1000 genomes]
rs7085712	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7096743	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7911298	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7913835	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7919099	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
2	chr10:97774600-97782200	Weak transcription	K562	blood
3	chr10:97777400-97782200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97777400-97782400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:97777400-97787000	Weak transcription	Left Ventricle	heart

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