Variant report

Variant	rs6584044
Chromosome Location	chr10:97767386-97767387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1011689	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10748652	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748653	0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs10748656	0.85[AFR][1000 genomes]
rs10786257	0.91[AFR][1000 genomes]
rs10786258	0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs10786259	0.88[ASW][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.93[MKK][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs10786260	0.88[ASW][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs10786261	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10882710	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1414921	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs1414922	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs2015029	0.85[EUR][1000 genomes]
rs2095591	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2901892	0.84[AFR][1000 genomes]
rs3748224	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961945	0.89[AFR][1000 genomes]
rs4145209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918984	0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs6584045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584046	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7085712	0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs7093112	0.88[CEU][hapmap]
rs7096743	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900838	0.88[CEU][hapmap];0.81[MEX][hapmap]
rs7911298	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7913835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919099	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6584044	CRTAC1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97765400-97777200	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:97767000-97767600	Enhancers	Aorta	Aorta

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