Variant report

Variant	rs7900838
Chromosome Location	chr10:97748040-97748041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1011689	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs2015029	0.83[ASN][1000 genomes]
rs2039617	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs4145209	0.89[CEU][hapmap]
rs6584044	0.88[CEU][hapmap];0.81[MEX][hapmap]
rs7093112	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7096743	0.89[CEU][hapmap];0.81[MEX][hapmap]
rs7913835	0.89[CEU][hapmap]
rs7919099	0.85[CEU][hapmap];0.81[MEX][hapmap]
rs7923326	0.90[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7900838	C10orf12	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97747400-97748600	Flanking Active TSS	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links