Variant report

Variant	rs11816772
Chromosome Location	chr10:97801226-97801227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97798115..97801536-chr10:97801750..97804794,4	MCF-7	breast:
3	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
4	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
5	chr10:97793928..97795682-chr10:97800634..97802290,2	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10159547	1.00[EUR][1000 genomes]
rs10882713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882719	0.84[AFR][1000 genomes]
rs10882720	0.82[AFR][1000 genomes]
rs11188564	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188605	0.91[AFR][1000 genomes]
rs11812974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814171	0.87[AFR][1000 genomes]
rs12264517	1.00[EUR][1000 genomes]
rs17111273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17111316	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34965352	0.85[AFR][1000 genomes]
rs57185821	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59237347	0.93[AFR][1000 genomes]
rs74151247	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74151248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151252	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9783259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97797800-97802600	Weak transcription	Small Intestine	intestine
2	chr10:97798800-97802400	Weak transcription	GM12878-XiMat	blood
3	chr10:97799000-97802800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:97799200-97802000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:97799200-97802200	Weak transcription	K562	blood
6	chr10:97799400-97802400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97799400-97802400	Weak transcription	HUVEC	blood vessel
11	chr10:97799400-97802600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:97799800-97802800	Weak transcription	Esophagus	oesophagus
13	chr10:97800800-97801600	Active TSS	Duodenum Mucosa	Duodenum
14	chr10:97800800-97801600	Enhancers	Placenta	Placenta
15	chr10:97801000-97802000	Weak transcription	Fetal Intestine Small	intestine
16	chr10:97801000-97802400	Weak transcription	Fetal Intestine Large	intestine

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