Variant report

Variant	rs74151252
Chromosome Location	chr10:97824758-97824759
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97824733..97827664-chr10:97849419..97851084,3	K562	blood:
2	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
3	chr10:97824438..97827083-chr10:97837081..97839051,2	K562	blood:
4	chr10:97824314..97827004-chr10:97832805..97834413,3	K562	blood:
5	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10882713	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10882719	0.83[AFR][1000 genomes]
rs10882720	0.80[AFR][1000 genomes]
rs11188564	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11188574	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11188591	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11188605	0.89[AFR][1000 genomes]
rs11812974	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11814171	0.85[AFR][1000 genomes]
rs11816772	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17111273	0.98[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17111316	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34965352	0.83[AFR][1000 genomes]
rs57185821	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59237347	0.91[AFR][1000 genomes]
rs74151247	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs74151248	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs74151249	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9783259	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
2	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:97816400-97831400	Weak transcription	Right Atrium	heart
4	chr10:97818000-97824800	Weak transcription	Fetal Kidney	kidney
5	chr10:97818000-97826200	Weak transcription	Gastric	stomach
6	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
8	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
9	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
10	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
11	chr10:97818200-97826800	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:97818200-97832800	Weak transcription	HMEC	breast
13	chr10:97818200-97833200	Weak transcription	NHEK	skin
14	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
16	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
18	chr10:97818600-97825600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:97819200-97824800	Weak transcription	Fetal Lung	lung
20	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:97819400-97824800	Weak transcription	NH-A	brain
22	chr10:97819400-97833400	Weak transcription	NHLF	lung
23	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:97819600-97825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:97819600-97828600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:97819600-97832600	Weak transcription	NHDF-Ad	bronchial
27	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:97819600-97848000	Weak transcription	HepG2	liver
29	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:97819600-97849400	Weak transcription	Ovary	ovary
33	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
34	chr10:97819800-97841400	Weak transcription	Liver	Liver
35	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:97820200-97833400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
41	chr10:97821000-97833200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:97821600-97825800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:97822000-97825600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:97822000-97833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:97822200-97825800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:97822200-97830200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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