Variant report

Variant	rs11188575
Chromosome Location	chr10:97814761-97814762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97802695..97805462-chr10:97811837..97816775,5	MCF-7	breast:
2	chr10:97814069..97816928-chr10:97887752..97890391,4	K562	blood:
3	chr10:97812701..97816784-chr10:97818025..97820813,5	K562	blood:
4	chr10:97812937..97816140-chr10:97847938..97850115,3	K562	blood:
5	chr10:97800626..97807538-chr10:97808400..97818452,20	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1047370	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10491070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509695	1.00[JPT][hapmap]
rs10509700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786247	1.00[JPT][hapmap]
rs10786261	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs10786262	0.86[CEU][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882709	0.94[ASN][1000 genomes]
rs10882714	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10882716	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882717	0.91[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882718	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188531	1.00[JPT][hapmap]
rs11188552	0.94[ASN][1000 genomes]
rs11188579	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188594	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188601	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188604	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188606	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188618	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188626	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188631	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188635	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap]
rs11595809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11597197	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11598475	1.00[JPT][hapmap]
rs11598546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs11598837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11599170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11814327	1.00[CEU][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs12354644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12354762	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359343	1.00[JPT][hapmap]
rs12359842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1336455	0.86[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17382898	1.00[JPT][hapmap]
rs1935815	1.00[JPT][hapmap]
rs2039616	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2861153	1.00[JPT][hapmap]
rs3961944	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344425	1.00[JPT][hapmap]
rs4512761	1.00[JPT][hapmap]
rs61858613	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713070	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7895056	1.00[JPT][hapmap]
rs7896077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7913418	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs915506	0.86[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804400-97816600	Weak transcription	Esophagus	oesophagus
2	chr10:97804600-97816600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:97804600-97816600	Weak transcription	Placenta	Placenta
4	chr10:97804600-97816600	Weak transcription	Gastric	stomach
5	chr10:97804600-97816800	Weak transcription	Ovary	ovary
6	chr10:97804600-97817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:97804600-97817000	Weak transcription	Aorta	Aorta
8	chr10:97804600-97817000	Weak transcription	Psoas Muscle	Psoas
9	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
10	chr10:97804800-97816400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:97804800-97824200	Weak transcription	Small Intestine	intestine
12	chr10:97805000-97816400	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:97805000-97816600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:97805000-97816600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:97805000-97816600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:97805000-97816600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:97805000-97816600	Weak transcription	Fetal Stomach	stomach
18	chr10:97805000-97816600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:97805000-97816800	Weak transcription	Brain Angular Gyrus	brain
20	chr10:97805000-97816800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:97805000-97816800	Weak transcription	Colonic Mucosa	Colon
22	chr10:97805000-97816800	Weak transcription	Right Ventricle	heart
23	chr10:97805000-97816800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:97805000-97816800	Weak transcription	Osteobl	bone
25	chr10:97805000-97817000	Weak transcription	Brain Substantia Nigra	brain
26	chr10:97805000-97817000	Weak transcription	Fetal Intestine Small	intestine
27	chr10:97805000-97817400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:97805000-97817600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:97805200-97816200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:97805200-97816200	Weak transcription	Liver	Liver
32	chr10:97805200-97816200	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:97805200-97816400	Weak transcription	HSMMtube	muscle
34	chr10:97805200-97816600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:97805200-97816600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:97805200-97816600	Weak transcription	Brain Anterior Caudate	brain
37	chr10:97805200-97816600	Weak transcription	NHLF	lung
38	chr10:97805200-97816800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:97805200-97816800	Weak transcription	HMEC	breast
40	chr10:97805400-97816200	Weak transcription	Fetal Kidney	kidney
41	chr10:97805400-97816400	Weak transcription	Adipose Nuclei	Adipose
42	chr10:97805400-97816600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:97805400-97816800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:97805400-97817000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:97805400-97817000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr10:97805400-97817600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr10:97805400-97822800	Weak transcription	Hela-S3	cervix
48	chr10:97805800-97822600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr10:97806200-97816200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:97806200-97816600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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