Variant report

Variant	rs11188531
Chromosome Location	chr10:97704739-97704740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97646629..97649140-chr10:97703482..97706047,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509686	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10509695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509700	1.00[JPT][hapmap]
rs10786247	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10882671	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10882698	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882718	1.00[JPT][hapmap]
rs10882723	1.00[JPT][hapmap]
rs11188484	1.00[JPT][hapmap]
rs11188504	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11188530	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs11188541	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188575	1.00[JPT][hapmap]
rs11188596	1.00[JPT][hapmap]
rs11188604	1.00[JPT][hapmap]
rs11188622	1.00[JPT][hapmap]
rs11595809	1.00[JPT][hapmap]
rs11598475	1.00[JPT][hapmap]
rs11599170	1.00[JPT][hapmap]
rs12354848	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12358481	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12359343	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs12359842	1.00[JPT][hapmap]
rs12411569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17382898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462179	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17553401	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1891536	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1935815	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2861151	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2861153	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3176895	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3181122	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3961944	1.00[JPT][hapmap]
rs4325250	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs4344425	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512761	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4918966	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4918976	0.81[EUR][1000 genomes]
rs56365500	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57294882	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60928707	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61075650	0.93[EUR][1000 genomes]
rs61559520	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61871140	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089668	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs713070	1.00[JPT][hapmap]
rs7895056	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11188531	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL
rs11188531	ALDH18A1	cis	cerebellum	SCAN
rs11188531	ENTPD1	cis	lymphoblastoid	seeQTL
rs11188531	ENTPD1	cis	multi-tissue	Pritchard
rs11188531	FRAT1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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