Variant report

Variant	rs11188530
Chromosome Location	chr10:97699286-97699287
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10509695	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs10509696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10509697	0.81[JPT][hapmap]
rs10786247	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs10882698	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs11188531	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs11819621	0.90[JPT][hapmap]
rs11819652	0.92[JPT][hapmap]
rs12359343	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs12411569	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs17111249	0.81[JPT][hapmap]
rs17382898	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs2901895	0.90[JPT][hapmap]
rs4325250	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4344425	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs7895056	0.85[CHB][hapmap]
rs7907476	0.90[JPT][hapmap]
rs7909124	0.90[JPT][hapmap]
rs7912552	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11188530	ENTPD1	cis	multi-tissue	Pritchard
rs11188530	ENTPD1	cis	Lymphoblastoid	GTEx
rs11188530	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL
rs11188530	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links