Variant report

Variant	rs17111249
Chromosome Location	chr10:97733951-97733952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10509696	0.88[JPT][hapmap]
rs10509697	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11188485	1.00[CEU][hapmap]
rs11188488	1.00[CEU][hapmap]
rs11188530	0.81[JPT][hapmap]
rs11819621	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap]
rs11819652	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap]
rs1414914	0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs17111247	0.97[ASN][1000 genomes]
rs17111341	1.00[CEU][hapmap]
rs17385618	1.00[CEU][hapmap]
rs2901895	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35557930	0.94[ASN][1000 genomes]
rs57635810	1.00[ASN][1000 genomes]
rs7090375	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7907476	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7909124	0.88[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912552	0.88[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761619	chr10:97719520-97746180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97725400-97735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:97725400-97736200	Weak transcription	GM12878-XiMat	blood
3	chr10:97733800-97734200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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