Variant report

Variant	rs35557930
Chromosome Location	chr10:97731908-97731909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12765198	0.86[EUR][1000 genomes]
rs12775584	0.91[EUR][1000 genomes]
rs1414914	0.85[ASN][1000 genomes]
rs17111247	0.90[ASN][1000 genomes]
rs17111249	0.94[ASN][1000 genomes]
rs2901895	0.90[ASN][1000 genomes]
rs34777055	0.89[EUR][1000 genomes]
rs57635810	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7090375	0.90[ASN][1000 genomes]
rs7904176	0.86[EUR][1000 genomes]
rs7907476	0.90[ASN][1000 genomes]
rs7909124	0.90[ASN][1000 genomes]
rs7912552	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761619	chr10:97719520-97746180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97725400-97735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:97725400-97736200	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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