Variant report

Variant	rs12765198
Chromosome Location	chr10:97696139-97696140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509697	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs11599105	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs12761082	0.89[EUR][1000 genomes]
rs12762284	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs12769120	0.81[CEU][hapmap]
rs12775584	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34777055	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35298116	0.89[EUR][1000 genomes]
rs35557930	0.86[EUR][1000 genomes]
rs35864527	0.88[EUR][1000 genomes]
rs4918979	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs57635810	0.83[EUR][1000 genomes]
rs66530311	0.89[EUR][1000 genomes]
rs66851219	0.86[EUR][1000 genomes]
rs67166869	0.89[EUR][1000 genomes]
rs67870248	0.86[EUR][1000 genomes]
rs7904176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97690400-97699000	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97694600-97697000	Weak transcription	Fetal Stomach	stomach
3	chr10:97694600-97697600	Weak transcription	Aorta	Aorta
4	chr10:97695000-97696400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:97695000-97696400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:97695000-97696600	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links