Variant report

Variant	rs10509700
Chromosome Location	chr10:97894531-97894532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
2	chr10:97802289..97805313-chr10:97893029..97895743,3	MCF-7	breast:
3	chr10:97887805..97893654-chr10:97893672..97904604,20	MCF-7	breast:
4	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
5	chr10:97848496..97850292-chr10:97893666..97896011,2	MCF-7	breast:
6	chr10:97802862..97805613-chr10:97893872..97896064,2	K562	blood:

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10491070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509695	1.00[JPT][hapmap]
rs10509701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10882718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882723	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188531	1.00[JPT][hapmap]
rs11188575	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11188606	0.88[ASN][1000 genomes]
rs11188613	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11188618	0.94[ASN][1000 genomes]
rs11188622	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188626	0.83[ASN][1000 genomes]
rs11188627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188631	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188632	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11591374	0.95[YRI][hapmap]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596126	0.95[YRI][hapmap]
rs11597197	0.94[ASN][1000 genomes]
rs11598546	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11599662	0.95[YRI][hapmap]
rs12354644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768772	0.95[YRI][hapmap]
rs12771933	0.95[YRI][hapmap]
rs12778345	0.95[YRI][hapmap]
rs17382898	1.00[JPT][hapmap]
rs17383738	0.84[YRI][hapmap]
rs2039616	1.00[CHB][hapmap]
rs2125060	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4344425	1.00[JPT][hapmap]
rs60450792	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7081169	0.86[YRI][hapmap]
rs7096164	0.95[YRI][hapmap]
rs713070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7896077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916068	1.00[YRI][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97894600	Weak transcription	Left Ventricle	heart
5	chr10:97890800-97894600	Weak transcription	Ovary	ovary
6	chr10:97890800-97895600	Weak transcription	Hela-S3	cervix
7	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
9	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97891000-97894600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:97891000-97896400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:97891000-97896600	Weak transcription	Aorta	Aorta
13	chr10:97891000-97906400	Weak transcription	Right Ventricle	heart
14	chr10:97891000-97906600	Weak transcription	Psoas Muscle	Psoas
15	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
16	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
19	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
20	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
21	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:97891400-97918200	Weak transcription	NHLF	lung
23	chr10:97891600-97894600	Weak transcription	Brain Substantia Nigra	brain
24	chr10:97891600-97896400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:97891600-97896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:97891600-97896600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
29	chr10:97891800-97894600	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:97891800-97895200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
32	chr10:97892000-97895400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:97892000-97896200	Weak transcription	Fetal Intestine Small	intestine
34	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr10:97892400-97898600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:97892400-97901400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr10:97892400-97909600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:97892600-97896600	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr10:97892600-97898200	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:97892600-97907800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:97892600-97909800	Strong transcription	Liver	Liver
43	chr10:97892800-97896400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:97892800-97898400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr10:97892800-97907800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr10:97892800-97909400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:97893000-97894800	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:97893000-97895000	Strong transcription	Brain Cingulate Gyrus	brain
50	chr10:97893000-97895200	Strong transcription	GM12878-XiMat	blood

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