Variant report

Variant	rs7916068
Chromosome Location	chr10:97884989-97884990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97884124-97885165	NB4	blood:	n/a	n/a
2	FOXA1	chr10:97884474-97885283	HepG2	liver:	n/a	n/a
3	IRF1	chr10:97884422-97885130	K562	blood:	n/a	chr10:97884867-97884881 chr10:97884869-97884880 chr10:97885065-97885079 chr10:97885067-97885081
4	EP300	chr10:97884028-97885313	K562	blood:	n/a	n/a
5	HEY1	chr10:97884964-97885287	HepG2	liver:	n/a	n/a
6	POLR2A	chr10:97884296-97885215	MCF10A-Er-Src	breast:	n/a	n/a
7	TBL1XR1	chr10:97884069-97886025	K562	blood:	n/a	n/a
8	ARID3A	chr10:97884195-97885263	K562	blood:	n/a	n/a
9	CEBPB	chr10:97883854-97885207	K562	blood:	n/a	chr10:97884467-97884478
10	ZMIZ1	chr10:97884403-97885023	K562	blood:	n/a	n/a
11	JUND	chr10:97884078-97885236	K562	blood:	n/a	chr10:97885203-97885212
12	MAFK	chr10:97884579-97885316	HepG2	liver:	n/a	n/a
13	MAFF	chr10:97884496-97885292	HepG2	liver:	n/a	n/a
14	CEBPB	chr10:97883790-97885107	HCT-116	colon:	n/a	chr10:97884467-97884478
15	ARID3A	chr10:97884064-97885174	HepG2	liver:	n/a	n/a
16	CEBPB	chr10:97883890-97885181	HepG2	liver:	n/a	chr10:97884467-97884478
17	STAT3	chr10:97884345-97885083	MCF10A-Er-Src	breast:	n/a	chr10:97885068-97885079
18	FOXA2	chr10:97884318-97885345	HepG2	liver:	n/a	n/a
19	IRF1	chr10:97884055-97885201	K562	blood:	n/a	chr10:97884867-97884881 chr10:97884869-97884880 chr10:97885065-97885079 chr10:97885067-97885081
20	CEBPB	chr10:97883946-97885021	HCT-116	colon:	n/a	chr10:97884467-97884478
21	FOXA1	chr10:97884532-97885299	HepG2	liver:	n/a	n/a
22	FOXA2	chr10:97884949-97885151	HepG2	liver:	n/a	n/a
23	MAX	chr10:97883973-97885190	NB4	blood:	n/a	n/a
24	ZNF384	chr10:97884376-97885213	K562	blood:	n/a	n/a
25	CEBPB	chr10:97883855-97885182	Hela-S3	cervix:	n/a	chr10:97884467-97884478
26	MYC	chr10:97884073-97885292	NB4	blood:	n/a	n/a
27	FOXA1	chr10:97884909-97885136	HepG2	liver:	n/a	n/a
28	ZNF143	chr10:97884125-97885369	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
2	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
3	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
4	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
5	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
6	chr10:97843811..97845627-chr10:97883061..97885874,2	K562	blood:
7	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
8	chr10:97801795..97805700-chr10:97884363..97887508,3	MCF-7	breast:

Variant related genes	Relation type
ZNF518A	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10450395	1.00[ASN][1000 genomes]
rs10491070	1.00[YRI][hapmap]
rs10509700	1.00[YRI][hapmap]
rs10509701	0.95[YRI][hapmap]
rs10882723	0.95[YRI][hapmap]
rs11188622	1.00[YRI][hapmap]
rs11188631	0.95[YRI][hapmap]
rs11591374	0.94[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11595327	1.00[ASN][1000 genomes]
rs11595809	1.00[YRI][hapmap]
rs11596126	0.87[CEU][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	0.94[YRI][hapmap]
rs11598837	1.00[YRI][hapmap]
rs11599170	1.00[YRI][hapmap]
rs11599662	0.88[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	1.00[ASN][1000 genomes]
rs12354644	1.00[YRI][hapmap]
rs12761705	0.95[YRI][hapmap]
rs12768772	0.88[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12778345	0.94[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779295	0.81[AMR][1000 genomes]
rs12783483	1.00[ASN][1000 genomes]
rs12784299	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	0.87[CEU][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs34084924	1.00[ASN][1000 genomes]
rs34091243	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34519673	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603628	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	1.00[ASN][1000 genomes]
rs57334361	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	1.00[ASN][1000 genomes]
rs61869173	1.00[ASN][1000 genomes]
rs66728103	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081169	0.88[CEU][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs7096164	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7896077	0.95[YRI][hapmap]
rs7918957	1.00[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97884000-97885000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97884000-97885000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr10:97884000-97885000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr10:97884000-97885200	Flanking Active TSS	A549	lung
5	chr10:97884200-97885000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr10:97884200-97885000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:97884200-97885000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr10:97884200-97885000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr10:97884400-97885000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:97884400-97885000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:97884400-97885000	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr10:97884400-97885000	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr10:97884600-97885000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr10:97884800-97885000	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr10:97884800-97885000	Active TSS	HepG2	liver
16	chr10:97884800-97885000	Active TSS	K562	blood
17	chr10:97884800-97885200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:97884800-97885200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:97884800-97885200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:97884800-97885200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:97884800-97885200	Enhancers	Fetal Intestine Large	intestine
22	chr10:97884800-97885200	Enhancers	Fetal Intestine Small	intestine
23	chr10:97884800-97885200	Enhancers	Placenta	Placenta
24	chr10:97884800-97885200	Enhancers	Fetal Thymus	thymus
25	chr10:97884800-97885200	Enhancers	NHEK	skin
26	chr10:97884800-97885400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr10:97884800-97885400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:97884800-97885400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:97884800-97885400	Enhancers	Dnd41	blood
30	chr10:97884800-97885600	Enhancers	Hela-S3	cervix
31	chr10:97884800-97889000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:97884800-97889000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:97884800-97889000	Weak transcription	HMEC	breast
34	chr10:97884800-97889200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:97884800-97889200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:97884800-97889200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:97884800-97889200	Weak transcription	Gastric	stomach
38	chr10:97884800-97889400	Weak transcription	Placenta Amnion	Placenta Amnion

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