Variant report

Variant	rs7096164
Chromosome Location	chr10:97868205-97868206
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97849405..97851373-chr10:97867555..97870050,2	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10450395	1.00[ASN][1000 genomes]
rs10491070	0.95[YRI][hapmap]
rs10509700	0.95[YRI][hapmap]
rs10509701	1.00[YRI][hapmap]
rs10882723	0.82[LWK][hapmap];1.00[YRI][hapmap]
rs11188622	0.95[YRI][hapmap]
rs11188631	1.00[YRI][hapmap]
rs11591374	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11595327	1.00[ASN][1000 genomes]
rs11595809	0.95[YRI][hapmap]
rs11596126	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	0.82[LWK][hapmap];1.00[YRI][hapmap]
rs11598837	0.94[YRI][hapmap]
rs11599170	0.95[YRI][hapmap]
rs11599662	0.87[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	1.00[ASN][1000 genomes]
rs12354644	0.95[YRI][hapmap]
rs12761705	1.00[YRI][hapmap]
rs12768772	0.87[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	1.00[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];0.91[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12778345	0.87[ASW][hapmap];0.94[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783483	1.00[ASN][1000 genomes]
rs12784299	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	0.87[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs34084924	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34091243	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34519673	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603628	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	1.00[ASN][1000 genomes]
rs57334361	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	1.00[ASN][1000 genomes]
rs61869173	1.00[ASN][1000 genomes]
rs66728103	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081169	0.87[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7896077	1.00[YRI][hapmap]
rs7916068	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918957	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7096164	OPALIN	cis	parietal	SCAN
rs7096164	ZNF518A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97868000-97872200	Weak transcription	K562	blood

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