Variant report

Variant	rs34519673
Chromosome Location	chr10:97842333-97842334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97840692..97844174-chr10:97847341..97851045,4	MCF-7	breast:
2	chr10:97831034..97837353-chr10:97838908..97844842,8	K562	blood:
3	chr10:97837927..97845903-chr10:97847797..97851072,11	K562	blood:
4	chr10:97842117..97843630-chr10:97844138..97845753,2	K562	blood:
5	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
6	chr10:97842117..97844012-chr10:97844050..97845753,3	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10450395	1.00[ASN][1000 genomes]
rs11591374	0.95[EUR][1000 genomes]
rs11595327	1.00[ASN][1000 genomes]
rs11596126	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599662	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	1.00[ASN][1000 genomes]
rs12768772	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12778345	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783483	1.00[ASN][1000 genomes]
rs12784299	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34084924	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34091243	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34603628	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	1.00[ASN][1000 genomes]
rs57334361	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61869173	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66728103	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081169	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096164	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7916068	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918957	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
2	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
3	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
4	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
5	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
8	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:97819600-97848000	Weak transcription	HepG2	liver
10	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:97819600-97849400	Weak transcription	Ovary	ovary
14	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
23	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
26	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
30	chr10:97825800-97848200	Weak transcription	Fetal Intestine Small	intestine
31	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:97834000-97849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:97834000-97849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:97834600-97849000	Weak transcription	HSMMtube	muscle
35	chr10:97834800-97847600	Weak transcription	Dnd41	blood
36	chr10:97835000-97849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:97836400-97849200	Weak transcription	Thymus	Thymus
38	chr10:97838000-97849000	Weak transcription	Brain Germinal Matrix	brain
39	chr10:97838000-97849200	Weak transcription	Fetal Brain Male	brain
40	chr10:97838400-97849000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:97839800-97849200	Weak transcription	Fetal Lung	lung
42	chr10:97840200-97844200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:97840600-97849200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:97841400-97842400	Strong transcription	Primary T cells from cord blood	blood
45	chr10:97841400-97842400	Strong transcription	Liver	Liver
46	chr10:97841800-97842600	Strong transcription	Adipose Nuclei	Adipose
47	chr10:97841800-97849200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:97842000-97842400	Strong transcription	Primary B cells from cord blood	blood
49	chr10:97842200-97842400	Enhancers	Left Ventricle	heart
50	chr10:97842200-97849200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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