Variant report

Variant	rs12778345
Chromosome Location	chr10:97846067-97846068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
2	chr10:97843254..97847751-chr10:97848510..97851272,5	MCF-7	breast:
3	chr10:97802948..97805234-chr10:97845478..97847213,2	K562	blood:
4	chr10:97844316..97846952-chr10:97890277..97892301,2	MCF-7	breast:
5	chr10:97845947..97847739-chr10:97848034..97849762,3	K562	blood:
6	chr10:97830567..97832820-chr10:97844273..97848147,3	K562	blood:
7	chr10:97838210..97840381-chr10:97845009..97847599,2	K562	blood:
8	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-3	chr10:97845900-97846228	NONHSAT015790

No data

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10450395	1.00[ASN][1000 genomes]
rs10491070	0.95[YRI][hapmap]
rs10509700	0.95[YRI][hapmap]
rs10509701	1.00[YRI][hapmap]
rs10882723	0.82[LWK][hapmap];1.00[YRI][hapmap]
rs11188622	0.95[YRI][hapmap]
rs11188631	1.00[YRI][hapmap]
rs11591374	0.87[ASW][hapmap];0.88[CEU][hapmap];0.93[GIH][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11595327	1.00[ASN][1000 genomes]
rs11595809	0.95[YRI][hapmap]
rs11596126	0.87[ASW][hapmap];0.93[CEU][hapmap];0.93[GIH][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	0.82[LWK][hapmap];1.00[YRI][hapmap]
rs11598837	0.94[YRI][hapmap]
rs11599170	0.95[YRI][hapmap]
rs11599662	0.93[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	1.00[ASN][1000 genomes]
rs12354644	0.95[YRI][hapmap]
rs12761705	1.00[YRI][hapmap]
rs12768772	0.93[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	0.87[ASW][hapmap];0.81[CEU][hapmap];0.94[LWK][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783483	1.00[ASN][1000 genomes]
rs12784299	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	0.93[CEU][hapmap];0.82[LWK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs34084924	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34091243	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34519673	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603628	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	1.00[ASN][1000 genomes]
rs57334361	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	1.00[ASN][1000 genomes]
rs61869173	1.00[ASN][1000 genomes]
rs66728103	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081169	0.93[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096164	0.87[ASW][hapmap];0.94[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7896077	1.00[YRI][hapmap]
rs7916068	0.94[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918957	1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
2	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
3	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
4	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
7	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:97819600-97848000	Weak transcription	HepG2	liver
9	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:97819600-97849400	Weak transcription	Ovary	ovary
13	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
22	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
25	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
29	chr10:97825800-97848200	Weak transcription	Fetal Intestine Small	intestine
30	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:97834000-97849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:97834000-97849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:97834600-97849000	Weak transcription	HSMMtube	muscle
34	chr10:97834800-97847600	Weak transcription	Dnd41	blood
35	chr10:97835000-97849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:97836400-97849200	Weak transcription	Thymus	Thymus
37	chr10:97838000-97849000	Weak transcription	Brain Germinal Matrix	brain
38	chr10:97838000-97849200	Weak transcription	Fetal Brain Male	brain
39	chr10:97838400-97849000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:97839800-97849200	Weak transcription	Fetal Lung	lung
41	chr10:97840600-97849200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:97841800-97849200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97842200-97849200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:97842400-97848000	Weak transcription	Primary B cells from cord blood	blood
45	chr10:97842400-97848400	Weak transcription	Liver	Liver
46	chr10:97842400-97848800	Weak transcription	Primary T cells from cord blood	blood
47	chr10:97842400-97849400	Weak transcription	Left Ventricle	heart
48	chr10:97842600-97849000	Weak transcription	Adipose Nuclei	Adipose
49	chr10:97843000-97849400	Weak transcription	Fetal Heart	heart
50	chr10:97843800-97849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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