Variant report

Variant	rs11596126
Chromosome Location	chr10:97818340-97818341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97812701..97816784-chr10:97818025..97820813,5	K562	blood:
2	chr10:97800626..97807538-chr10:97808400..97818452,20	K562	blood:
3	chr10:97803328..97806742-chr10:97815261..97819253,4	K562	blood:
4	chr10:97802667..97805109-chr10:97816147..97818756,3	MCF-7	breast:
5	chr10:97816827..97819468-chr10:97823463..97826040,2	K562	blood:
6	chr10:97809982..97812062-chr10:97817985..97822166,3	K562	blood:
7	chr10:97812701..97814642-chr10:97818025..97819843,2	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000266407	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10450395	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491070	0.95[YRI][hapmap]
rs10509700	0.95[YRI][hapmap]
rs10509701	1.00[YRI][hapmap]
rs10882723	1.00[YRI][hapmap]
rs11188622	0.95[YRI][hapmap]
rs11188631	1.00[YRI][hapmap]
rs11591374	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11595327	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.95[YRI][hapmap]
rs11598546	1.00[YRI][hapmap]
rs11598837	0.94[YRI][hapmap]
rs11599170	0.95[YRI][hapmap]
rs11599662	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	1.00[ASN][1000 genomes]
rs12354644	0.95[YRI][hapmap]
rs12761705	1.00[YRI][hapmap]
rs12768772	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778345	0.87[ASW][hapmap];0.93[CEU][hapmap];0.93[GIH][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783483	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784299	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34084924	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34091243	0.80[EUR][1000 genomes]
rs34519673	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603628	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57334361	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869173	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66728103	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081169	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096164	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7896077	1.00[YRI][hapmap]
rs7916068	0.87[CEU][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918957	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11596126	ZNF518A	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
2	chr10:97804800-97824200	Weak transcription	Small Intestine	intestine
3	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:97805400-97822800	Weak transcription	Hela-S3	cervix
5	chr10:97805800-97822600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:97806200-97822200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:97806200-97822400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:97806600-97821200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:97806800-97822600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97807000-97822400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:97807000-97823000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:97809000-97822800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:97812800-97822400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:97814400-97823200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:97814600-97819600	Strong transcription	Primary T cells from cord blood	blood
16	chr10:97814600-97822400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:97814600-97822600	Strong transcription	Fetal Thymus	thymus
18	chr10:97814600-97823200	Strong transcription	Dnd41	blood
19	chr10:97814800-97822400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:97815000-97819600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr10:97815000-97820200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:97815000-97821600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:97815200-97822400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:97815400-97819200	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:97815600-97819400	Strong transcription	A549	lung
26	chr10:97815600-97822600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:97816000-97820400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:97816000-97821000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr10:97816000-97822800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:97816200-97819200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:97816200-97819600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:97816200-97819600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:97816200-97819600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:97816200-97819600	Strong transcription	Fetal Muscle Leg	muscle
35	chr10:97816200-97819600	Strong transcription	Left Ventricle	heart
36	chr10:97816200-97819600	Strong transcription	HepG2	liver
37	chr10:97816200-97819800	Strong transcription	Liver	Liver
38	chr10:97816200-97819800	Strong transcription	Fetal Intestine Large	intestine
39	chr10:97816200-97820200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:97816200-97820200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:97816200-97820400	Strong transcription	Primary B cells from cord blood	blood
42	chr10:97816200-97820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr10:97816200-97821200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:97816200-97821200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:97816200-97821800	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr10:97816200-97822400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:97816200-97822400	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr10:97816200-97822600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr10:97816400-97819400	Strong transcription	NH-A	brain
50	chr10:97816400-97819600	Strong transcription	Brain Hippocampus Middle	brain

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