Variant report

Variant	rs34091243
Chromosome Location	chr10:97909910-97909911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97847873..97850312-chr10:97907451..97910548,3	MCF-7	breast:
2	chr10:97888575..97891553-chr10:97906661..97910426,5	MCF-7	breast:
3	chr10:97879433..97880940-chr10:97908059..97910895,2	MCF-7	breast:
4	chr10:97905828..97907485-chr10:97909859..97911575,2	K562	blood:
5	chr10:97889328..97891733-chr10:97908249..97910352,2	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11591374	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11596126	0.80[EUR][1000 genomes]
rs11599662	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12768772	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12771933	0.81[AFR][1000 genomes]
rs12778345	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12784299	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34519673	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34603628	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34846723	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35038457	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs57334361	0.81[AFR][1000 genomes]
rs66728103	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7096164	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7916068	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
6	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
8	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
11	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
12	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:97891400-97918200	Weak transcription	NHLF	lung
15	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
17	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
18	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:97895000-97911000	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:97895000-97911200	Weak transcription	Lung	lung
23	chr10:97895000-97911400	Weak transcription	Brain Angular Gyrus	brain
24	chr10:97895200-97911200	Weak transcription	Pancreas	Pancrea
25	chr10:97895200-97911600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:97895200-97917600	Weak transcription	NH-A	brain
27	chr10:97895800-97911200	Weak transcription	NHDF-Ad	bronchial
28	chr10:97895800-97911800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:97897000-97911000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:97897000-97911000	Weak transcription	Ovary	ovary
31	chr10:97897000-97911200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:97897400-97911800	Weak transcription	NHEK	skin
33	chr10:97897800-97911200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:97897800-97916600	Weak transcription	HMEC	breast
35	chr10:97898000-97911200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:97898000-97911200	Weak transcription	HSMM	muscle
37	chr10:97898200-97911200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:97899600-97910800	Weak transcription	K562	blood
39	chr10:97900400-97916400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:97902600-97912800	Weak transcription	Osteobl	bone
41	chr10:97903000-97912600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:97903400-97911200	Weak transcription	Brain Substantia Nigra	brain
44	chr10:97903600-97920200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr10:97903800-97911200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:97903800-97911200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:97903800-97916200	Weak transcription	HUVEC	blood vessel
48	chr10:97904000-97910800	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:97904000-97911000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:97904000-97911000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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