Variant report

Variant	rs34603628
Chromosome Location	chr10:97870924-97870925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97848200..97850746-chr10:97870662..97872424,2	K562	blood:
2	chr10:97856059..97858153-chr10:97870361..97872310,2	K562	blood:
3	chr10:97856259..97858291-chr10:97868440..97871393,2	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10450395	1.00[ASN][1000 genomes]
rs11591374	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11595327	1.00[ASN][1000 genomes]
rs11596126	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599662	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	1.00[ASN][1000 genomes]
rs12768772	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12778345	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783483	1.00[ASN][1000 genomes]
rs12784299	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	1.00[ASN][1000 genomes]
rs34084924	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34091243	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34519673	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	1.00[ASN][1000 genomes]
rs57334361	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	1.00[ASN][1000 genomes]
rs61869173	1.00[ASN][1000 genomes]
rs66728103	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081169	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7096164	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7916068	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918957	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34603628	ALDH18A1	cis	brain	BrainEAC

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97868000-97872200	Weak transcription	K562	blood
2	chr10:97870200-97871000	Bivalent Enhancer	NHDF-Ad	bronchial

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