Variant report

Variant	rs7081169
Chromosome Location	chr10:97777175-97777176
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97776829..97779555-chr10:97889274..97891059,2	K562	blood:
2	chr10:97453498..97454357-chr10:97776450..97777364,2	MCF-7	breast:
3	chr10:97776713..97777777-chr10:98099654..98100263,3	K562	blood:
4	chr10:97776929..97777676-chr10:98052758..98053580,3	MCF-7	breast:
5	chr10:97776162..97777909-chr10:97781246..97782872,2	MCF-7	breast:
6	chr10:97776677..97777667-chr10:97989033..97989541,2	K562	blood:
7	chr10:97776720..97777641-chr10:98094417..98094947,2	MCF-7	breast:
8	chr10:97776596..97777595-chr10:98052760..98053742,4	K562	blood:
9	chr10:97774224..97779073-chr10:97779933..97783728,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10450395	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491070	0.84[YRI][hapmap]
rs10509700	0.86[YRI][hapmap]
rs10509701	0.91[YRI][hapmap]
rs10882723	0.90[YRI][hapmap]
rs11188622	0.86[YRI][hapmap]
rs11188631	0.90[YRI][hapmap]
rs11591374	0.82[CEU][hapmap];0.90[YRI][hapmap]
rs11595327	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.86[YRI][hapmap]
rs11596126	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	0.89[YRI][hapmap]
rs11598837	0.85[YRI][hapmap]
rs11599170	0.86[YRI][hapmap]
rs11599662	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs12354644	0.86[YRI][hapmap]
rs12761705	0.90[YRI][hapmap]
rs12768772	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	0.87[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778345	0.93[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783483	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784299	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34084924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34519673	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603628	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57334361	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869173	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66728103	1.00[ASN][1000 genomes]
rs7096164	0.87[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7896077	0.90[YRI][hapmap]
rs7916068	0.88[CEU][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs7918957	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97765400-97777200	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
3	chr10:97771200-97777200	Weak transcription	Left Ventricle	heart
4	chr10:97774600-97782200	Weak transcription	K562	blood
5	chr10:97775800-97777600	Enhancers	Fetal Stomach	stomach
6	chr10:97776400-97777400	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:97776800-97777400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:97776800-97777400	Enhancers	Adipose Nuclei	Adipose
9	chr10:97776800-97777400	Enhancers	Liver	Liver
10	chr10:97776800-97777400	Enhancers	Colon Smooth Muscle	Colon
11	chr10:97776800-97777400	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:97776800-97777400	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr10:97776800-97777400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:97776800-97777400	Enhancers	Fetal Intestine Large	intestine
15	chr10:97776800-97777400	Enhancers	Fetal Intestine Small	intestine
16	chr10:97776800-97777400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:97777000-97777200	Flanking Active TSS	Fetal Kidney	kidney
18	chr10:97777000-97777400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:97777000-97777400	Enhancers	Skeletal Muscle Female	skeletal muscle

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