Variant report

Variant	rs10491070
Chromosome Location	chr10:97953286-97953287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97801040..97803608-chr10:97952712..97954225,2	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10491069	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10509700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509703	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs10882723	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10882728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188575	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188604	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188613	1.00[CHB][hapmap]
rs11188622	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188627	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188631	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11188632	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs11188656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188659	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11591374	0.95[YRI][hapmap]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11594595	0.94[ASN][1000 genomes]
rs11595809	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11596126	0.95[YRI][hapmap]
rs11598546	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11598837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11599170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11599662	0.95[YRI][hapmap]
rs12354644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12359842	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12761705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12768772	0.95[YRI][hapmap]
rs12771933	0.95[YRI][hapmap]
rs12778345	0.95[YRI][hapmap]
rs17383738	0.84[YRI][hapmap]
rs2039616	1.00[CHB][hapmap]
rs2125060	0.81[EUR][1000 genomes]
rs3961944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs60450792	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7081169	0.84[YRI][hapmap]
rs7096164	0.95[YRI][hapmap]
rs713070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs7896077	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7916068	1.00[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10491070	GPR120	cis	cerebellum	SCAN
rs10491070	CRTAC1	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
3	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
4	chr10:97948200-97963600	Weak transcription	Gastric	stomach
5	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97948400-97957000	Weak transcription	Fetal Intestine Small	intestine
7	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
10	chr10:97948800-97959200	Weak transcription	Spleen	Spleen
11	chr10:97949600-97956600	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97949600-97989200	Strong transcription	Liver	Liver
13	chr10:97949800-97953600	Strong transcription	Duodenum Mucosa	Duodenum
14	chr10:97949800-97953600	ZNF genes & repeats	GM12878-XiMat	blood
15	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus
16	chr10:97950600-97960600	Weak transcription	Small Intestine	intestine
17	chr10:97951800-97956000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:97952000-97954600	Weak transcription	Fetal Intestine Large	intestine
19	chr10:97952000-97955000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
21	chr10:97952200-97971800	Strong transcription	Primary B cells from cord blood	blood
22	chr10:97953000-97956600	Strong transcription	Rectal Mucosa Donor 31	rectum

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