Variant report

Variant	rs60450792
Chromosome Location	chr10:97908190-97908191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97847873..97850312-chr10:97907451..97910548,3	MCF-7	breast:
2	chr10:97906115..97908290-chr10:97911726..97914595,2	K562	blood:
3	chr10:97888575..97891553-chr10:97906661..97910426,5	MCF-7	breast:
4	chr10:97879433..97880940-chr10:97908059..97910895,2	MCF-7	breast:
5	chr10:97899843..97903652-chr10:97906126..97909504,4	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10491070	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10509700	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10509701	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10882723	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188622	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188631	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11188632	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11593049	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11595809	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11598546	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11598837	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11599170	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12354644	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12761705	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2125060	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7896077	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
6	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
8	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
11	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
12	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:97891400-97918200	Weak transcription	NHLF	lung
15	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
17	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
18	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97892400-97909600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:97892600-97909800	Strong transcription	Liver	Liver
22	chr10:97892800-97909400	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:97893000-97908400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:97893000-97909400	Strong transcription	Fetal Intestine Large	intestine
26	chr10:97893000-97909800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr10:97894600-97908400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:97895000-97911000	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:97895000-97911200	Weak transcription	Lung	lung
30	chr10:97895000-97911400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:97895200-97911200	Weak transcription	Pancreas	Pancrea
32	chr10:97895200-97911600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:97895200-97917600	Weak transcription	NH-A	brain
34	chr10:97895800-97911200	Weak transcription	NHDF-Ad	bronchial
35	chr10:97895800-97911800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:97897000-97911000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:97897000-97911000	Weak transcription	Ovary	ovary
38	chr10:97897000-97911200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:97897400-97911800	Weak transcription	NHEK	skin
40	chr10:97897800-97911200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:97897800-97916600	Weak transcription	HMEC	breast
42	chr10:97898000-97911200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:97898000-97911200	Weak transcription	HSMM	muscle
44	chr10:97898200-97911200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:97899600-97910800	Weak transcription	K562	blood
46	chr10:97900400-97916400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr10:97902000-97908200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:97902600-97912800	Weak transcription	Osteobl	bone
49	chr10:97903000-97912600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links