Variant report

Variant	rs11188622
Chromosome Location	chr10:97886691-97886692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
2	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
3	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
4	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
5	chr10:97859180..97860800-chr10:97885963..97887951,2	MCF-7	breast:
6	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
7	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
8	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
9	chr10:97875753..97878264-chr10:97885533..97887892,2	MCF-7	breast:
10	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
11	chr10:97801795..97805700-chr10:97884363..97887508,3	MCF-7	breast:
12	chr10:97864583..97866117-chr10:97886661..97888676,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000266407	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10491070	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509695	1.00[JPT][hapmap]
rs10509700	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509701	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10882718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882723	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188531	1.00[JPT][hapmap]
rs11188575	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11188606	0.88[ASN][1000 genomes]
rs11188613	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11188618	0.94[ASN][1000 genomes]
rs11188626	0.83[ASN][1000 genomes]
rs11188627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188631	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188632	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11591374	0.95[YRI][hapmap]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596126	0.95[YRI][hapmap]
rs11597197	0.94[ASN][1000 genomes]
rs11598546	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598837	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11599662	0.95[YRI][hapmap]
rs12354644	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768772	0.95[YRI][hapmap]
rs12771933	0.95[YRI][hapmap]
rs12778345	0.95[YRI][hapmap]
rs17382898	1.00[JPT][hapmap]
rs17383738	0.84[YRI][hapmap]
rs2039616	1.00[CHB][hapmap]
rs2125060	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4344425	1.00[JPT][hapmap]
rs60450792	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7081169	0.86[YRI][hapmap]
rs7096164	0.95[YRI][hapmap]
rs713070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7896077	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916068	1.00[YRI][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97884800-97889000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:97884800-97889000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:97884800-97889000	Weak transcription	HMEC	breast
4	chr10:97884800-97889200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:97884800-97889200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:97884800-97889200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:97884800-97889200	Weak transcription	Gastric	stomach
8	chr10:97884800-97889400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:97885000-97888800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97885200-97889000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:97885200-97889000	Weak transcription	Placenta	Placenta
12	chr10:97885200-97889000	Weak transcription	NHEK	skin
13	chr10:97885200-97889200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:97885200-97889200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:97885200-97889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:97885400-97888800	Weak transcription	Dnd41	blood
17	chr10:97885400-97889000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:97885400-97889000	Weak transcription	A549	lung
19	chr10:97885400-97889400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:97885600-97889000	Weak transcription	Hela-S3	cervix
21	chr10:97885800-97889000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:97886200-97887200	Weak transcription	K562	blood
23	chr10:97886200-97888600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links