Variant report

Variant	rs11591959
Chromosome Location	chr10:97988654-97988655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr10:97988254-97988679	HepG2	liver:	n/a	chr10:97988622-97988640 chr10:97988366-97988381 chr10:97988625-97988637 chr10:97988366-97988381

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97913585..97915280-chr10:97987700..97990255,2	K562	blood:

Variant related genes	Relation type
BLNK	TF binding region
ENSG00000177853	Chromatin interaction

rs_ID	r²[population]
rs10491070	1.00[JPT][hapmap]
rs10509700	1.00[JPT][hapmap]
rs10509701	1.00[JPT][hapmap]
rs10509703	1.00[JPT][hapmap]
rs10882718	1.00[JPT][hapmap]
rs10882723	1.00[JPT][hapmap]
rs10882728	1.00[JPT][hapmap]
rs11188575	1.00[JPT][hapmap]
rs11188596	1.00[JPT][hapmap]
rs11188604	1.00[JPT][hapmap]
rs11188622	1.00[JPT][hapmap]
rs11188627	1.00[JPT][hapmap]
rs11188635	1.00[JPT][hapmap]
rs11188656	1.00[JPT][hapmap]
rs11595809	1.00[JPT][hapmap]
rs11598546	1.00[JPT][hapmap]
rs11598837	1.00[JPT][hapmap]
rs11599170	1.00[JPT][hapmap]
rs12354644	1.00[JPT][hapmap]
rs12359842	1.00[JPT][hapmap]
rs12761705	1.00[JPT][hapmap]
rs3961944	1.00[JPT][hapmap]
rs713070	1.00[JPT][hapmap]
rs7896077	1.00[JPT][hapmap]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97949600-97989200	Strong transcription	Liver	Liver
2	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
3	chr10:97959000-97988800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:97965800-97998600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:97967600-97990600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:97972400-97989600	Strong transcription	Primary B cells from cord blood	blood
7	chr10:97972600-97989200	Strong transcription	GM12878-XiMat	blood
8	chr10:97973400-97989200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:97975000-97989600	Weak transcription	Lung	lung
10	chr10:97983200-97990400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:97983200-97992600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:97983200-97999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:97983400-97989000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:97983800-98002600	Weak transcription	Small Intestine	intestine
15	chr10:97986000-97994800	Weak transcription	Thymus	Thymus
16	chr10:97986200-97995600	Weak transcription	Gastric	stomach
17	chr10:97986200-98002400	Weak transcription	Stomach Mucosa	stomach
18	chr10:97986600-97989400	Weak transcription	Esophagus	oesophagus
19	chr10:97987400-97989800	Weak transcription	Spleen	Spleen
20	chr10:97987400-97994600	Weak transcription	Pancreas	Pancrea
21	chr10:97987400-98003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:97987400-98004200	Weak transcription	Colonic Mucosa	Colon
23	chr10:97987600-97989600	Enhancers	Fetal Intestine Large	intestine
24	chr10:97987600-97989800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:97987600-97995400	Weak transcription	Fetal Stomach	stomach
26	chr10:97987600-97995600	Weak transcription	Placenta	Placenta
27	chr10:97987800-97989000	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr10:97987800-97989200	Enhancers	Fetal Intestine Small	intestine
29	chr10:97987800-97989400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:97988600-97989200	Enhancers	HepG2	liver

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