Variant report

Variant	rs10509703
Chromosome Location	chr10:97924440-97924441
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97889748..97891438-chr10:97923791..97925678,2	MCF-7	breast:
2	chr10:97910420..97912683-chr10:97924000..97927291,3	K562	blood:
3	chr10:97922944..97925099-chr10:97927755..97929719,2	K562	blood:
4	chr10:97924295..97926346-chr10:97927012..97928959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1047370	0.82[CEU][hapmap]
rs10491070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509695	1.00[JPT][hapmap]
rs10509700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10509701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10786261	0.90[CEU][hapmap]
rs10786262	0.86[CEU][hapmap]
rs10882716	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882717	0.91[CEU][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10882728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188579	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188594	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188601	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188604	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188606	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188618	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188626	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188631	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11188632	0.94[ASN][1000 genomes]
rs11188635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11594595	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11595809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11597197	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11598837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11599170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11814327	1.00[CEU][hapmap]
rs12354644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12354762	0.82[EUR][1000 genomes]
rs12359842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1336455	0.86[CEU][hapmap]
rs17382898	1.00[JPT][hapmap]
rs2039616	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2125060	0.94[ASN][1000 genomes]
rs3961944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4344425	1.00[JPT][hapmap]
rs61858613	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs713070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7913418	0.87[CEU][hapmap]
rs915506	0.86[CEU][hapmap]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
4	chr10:97913000-97925400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:97914200-97924800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:97914200-97925600	Weak transcription	Fetal Stomach	stomach
7	chr10:97914200-97925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:97914200-97926200	Weak transcription	Pancreas	Pancrea
9	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:97917600-97924800	Weak transcription	Small Intestine	intestine
11	chr10:97917600-97925200	Weak transcription	Fetal Brain Female	brain
12	chr10:97917600-97925800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:97918000-97925400	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:97918200-97924600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:97918200-97925400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:97918200-97925800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:97918200-97925800	Weak transcription	Osteobl	bone
18	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
19	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:97918600-97925400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:97918600-97925600	Weak transcription	NHEK	skin
22	chr10:97918600-97925800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:97918600-97926200	Weak transcription	Left Ventricle	heart
24	chr10:97918600-97926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:97918800-97925800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:97918800-97926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:97918800-97926600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:97918800-97928000	Weak transcription	A549	lung
29	chr10:97918800-97929400	Weak transcription	HepG2	liver
30	chr10:97919000-97925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:97919200-97925800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:97919400-97925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:97919400-97925000	Weak transcription	K562	blood
34	chr10:97919400-97925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:97919400-97927400	Weak transcription	HSMMtube	muscle
36	chr10:97919600-97926800	Weak transcription	Fetal Thymus	thymus
37	chr10:97919600-97927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:97919800-97925000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:97919800-97925400	Weak transcription	Dnd41	blood
41	chr10:97919800-97927200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:97920000-97925400	Weak transcription	Primary T cells from cord blood	blood
43	chr10:97920200-97924600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr10:97920200-97926600	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:97920400-97926600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:97921200-97925200	Weak transcription	Fetal Lung	lung
48	chr10:97921200-97926600	Weak transcription	Primary B cells from cord blood	blood
49	chr10:97921400-97925800	Weak transcription	Placenta	Placenta
50	chr10:97921600-97925400	Weak transcription	Adipose Nuclei	Adipose

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