Variant report

Variant	rs11188594
Chromosome Location	chr10:97848952-97848953
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97845947..97847739-chr10:97848034..97849762,3	K562	blood:
2	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
3	chr10:97848038..97851071-chr10:97871743..97873669,3	MCF-7	breast:
4	chr10:97840461..97842109-chr10:97846882..97849195,2	MCF-7	breast:
5	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
6	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
7	chr10:97848840..97850347-chr10:98030578..98032838,2	MCF-7	breast:
8	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:
9	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
10	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97848666-97849064	XLOC_008914
2	lnc-CCNJ-4	chr10:97846433-97849195	NONHSAT015791

No data

Variant related genes	Relation type
ENSG00000200728	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000095585	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10458746	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs1047370	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10509699	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10509703	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10786261	1.00[CEU][hapmap]
rs10786262	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882714	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882718	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882728	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188572	0.82[ASN][1000 genomes]
rs11188575	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188578	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs11188579	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188580	0.85[ASN][1000 genomes]
rs11188581	0.83[ASN][1000 genomes]
rs11188582	0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188583	0.88[ASN][1000 genomes]
rs11188593	0.88[ASN][1000 genomes]
rs11188595	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188596	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188598	0.87[ASN][1000 genomes]
rs11188599	0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11188601	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11188603	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11188604	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188606	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188608	0.86[ASN][1000 genomes]
rs11188613	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188615	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11188616	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11188618	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188623	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11188626	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188627	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188635	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188639	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11188656	0.91[CEU][hapmap]
rs11188657	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11597197	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11814327	0.91[CEU][hapmap]
rs12219508	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs12221239	0.82[ASN][1000 genomes]
rs12354762	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12359842	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12414081	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12569991	0.88[ASN][1000 genomes]
rs12570955	0.84[ASN][1000 genomes]
rs12572217	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1336455	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111275	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1889921	0.82[ASN][1000 genomes]
rs2039616	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2085492	0.86[ASN][1000 genomes]
rs3814226	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3961944	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4145226	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs61858613	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs713070	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72474879	0.87[ASN][1000 genomes]
rs7903619	1.00[YRI][hapmap]
rs7913418	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs915506	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
2	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
3	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
4	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
7	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:97819600-97849400	Weak transcription	Ovary	ovary
12	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
20	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
23	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
27	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:97834000-97849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:97834000-97849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:97834600-97849000	Weak transcription	HSMMtube	muscle
31	chr10:97835000-97849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:97836400-97849200	Weak transcription	Thymus	Thymus
33	chr10:97838000-97849000	Weak transcription	Brain Germinal Matrix	brain
34	chr10:97838000-97849200	Weak transcription	Fetal Brain Male	brain
35	chr10:97838400-97849000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:97839800-97849200	Weak transcription	Fetal Lung	lung
37	chr10:97840600-97849200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:97841800-97849200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:97842200-97849200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:97842400-97849400	Weak transcription	Left Ventricle	heart
41	chr10:97842600-97849000	Weak transcription	Adipose Nuclei	Adipose
42	chr10:97843000-97849400	Weak transcription	Fetal Heart	heart
43	chr10:97843800-97849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:97844000-97849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:97844200-97849200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:97845200-97849200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:97848000-97849000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:97848200-97849000	Enhancers	Hela-S3	cervix
49	chr10:97848400-97849000	Enhancers	Liver	Liver
50	chr10:97848400-97849000	Enhancers	Duodenum Mucosa	Duodenum

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