Variant report

Variant	rs11188596
Chromosome Location	chr10:97853012-97853013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr10:97852763-97853334	HepG2	liver:	n/a	n/a
2	CEBPB	chr10:97852667-97853419	HepG2	liver:	n/a	chr10:97852849-97852860
3	EP300	chr10:97852728-97853511	HepG2	liver:	n/a	chr10:97852979-97852986 chr10:97852846-97852860
4	HEY1	chr10:97852834-97853439	HepG2	liver:	n/a	n/a
5	CEBPB	chr10:97852743-97853041	HepG2	liver:	n/a	chr10:97852849-97852860
6	RCOR1	chr10:97852659-97853343	HepG2	liver:	n/a	n/a
7	POLR2A	chr10:97852718-97853450	HepG2	liver:	n/a	n/a
8	FOXA1	chr10:97852655-97853471	HepG2	liver:	n/a	n/a
9	SP1	chr10:97852626-97853497	HepG2	liver:	n/a	n/a
10	EP300	chr10:97852717-97853414	HepG2	liver:	n/a	chr10:97852979-97852986 chr10:97852846-97852860
11	HEY1	chr10:97853004-97853460	HepG2	liver:	n/a	n/a
12	ARID3A	chr10:97852673-97853389	HepG2	liver:	n/a	n/a
13	MYBL2	chr10:97852589-97853547	HepG2	liver:	n/a	n/a
14	MBD4	chr10:97852710-97853449	HepG2	liver:	n/a	n/a
15	EP300	chr10:97852602-97853458	HepG2	liver:	n/a	chr10:97852979-97852986 chr10:97852846-97852860
16	JUND	chr10:97852581-97853235	HepG2	liver:	n/a	n/a
17	MYBL2	chr10:97852681-97853440	HepG2	liver:	n/a	n/a
18	HNF4A	chr10:97852738-97853457	HepG2	liver:	n/a	n/a
19	TBP	chr10:97852824-97853428	HepG2	liver:	n/a	n/a
20	FOXA1	chr10:97852734-97853465	HepG2	liver:	n/a	n/a
21	HNF4A	chr10:97852677-97853580	HepG2	liver:	n/a	n/a
22	HNF4A	chr10:97852801-97853422	HepG2	liver:	n/a	n/a
23	HNF4G	chr10:97852734-97853437	HepG2	liver:	n/a	n/a
24	HDAC2	chr10:97852694-97853443	HepG2	liver:	n/a	n/a
25	CEBPB	chr10:97852705-97853452	HepG2	liver:	n/a	chr10:97852849-97852860
26	FOXA1	chr10:97852648-97853442	HepG2	liver:	n/a	n/a
27	FOXA2	chr10:97852711-97853363	HepG2	liver:	n/a	n/a
28	FOXA1	chr10:97852748-97853370	HepG2	liver:	n/a	n/a
29	HNF4G	chr10:97852687-97853422	HepG2	liver:	n/a	n/a
30	MXI1	chr10:97852590-97853452	HepG2	liver:	n/a	n/a
31	TEAD4	chr10:97852617-97853560	HepG2	liver:	n/a	n/a
32	NFIC	chr10:97852796-97853472	HepG2	liver:	n/a	n/a
33	YY1	chr10:97852774-97853151	HepG2	liver:	n/a	n/a
34	FOXA2	chr10:97852763-97854545	HepG2	liver:	n/a	n/a
35	MAFK	chr10:97852521-97853236	HepG2	liver:	n/a	n/a
36	NFIC	chr10:97852729-97853452	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
2	chr10:97848458..97851464-chr10:97851557..97854751,6	MCF-7	breast:
3	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
4	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1047370	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10491070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509695	1.00[JPT][hapmap]
rs10509700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10786247	1.00[JPT][hapmap]
rs10786262	0.80[EUR][1000 genomes]
rs10882709	0.94[ASN][1000 genomes]
rs10882714	0.83[AMR][1000 genomes]
rs10882716	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10882717	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882718	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188531	1.00[JPT][hapmap]
rs11188552	0.94[ASN][1000 genomes]
rs11188575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188579	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188594	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188601	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188606	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188613	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11188626	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188631	1.00[CHB][hapmap]
rs11188635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap]
rs11595809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11597197	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11598546	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11598837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11599170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12354644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12354762	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359343	1.00[JPT][hapmap]
rs12359842	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1336455	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17382898	1.00[JPT][hapmap]
rs2039616	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3961944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344425	1.00[JPT][hapmap]
rs61858613	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7895056	1.00[JPT][hapmap]
rs7896077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7913418	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs915506	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97852600-97854000	Flanking Active TSS	HepG2	liver
2	chr10:97852800-97854600	Enhancers	K562	blood

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