Variant report

Variant	rs10882716
Chromosome Location	chr10:97850684-97850685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97849322-97850780	HL-60	blood:	n/a	n/a
2	POLR2A	chr10:97848882-97850709	HepG2	liver:	n/a	n/a
3	POLR2A	chr10:97849301-97850700	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:97849162-97850783	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr10:97849272-97850711	GM12878	blood:	n/a	n/a
6	HCFC1	chr10:97848913-97850936	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr10:97849171-97850707	K562	blood:	n/a	n/a
8	POLR2A	chr10:97849299-97850724	NB4	blood:	n/a	n/a
9	POLR2A	chr10:97849314-97850749	Raji	blood:	n/a	n/a
10	POLR2A	chr10:97849269-97850743	K562	blood:	n/a	n/a
11	TCF12	chr10:97849291-97850818	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr10:97849121-97850718	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr10:97849279-97850723	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr10:97849346-97850808	ECC-1	luminal epithelium:	n/a	n/a
15	POLR2A	chr10:97849294-97850693	K562	blood:	n/a	n/a
16	POLR2A	chr10:97848944-97850782	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97850552..97851525-chr10:97889217..97890024,2	NB4	blood:
2	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
3	chr10:97848038..97851071-chr10:97871743..97873669,3	MCF-7	breast:
4	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
5	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
6	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
7	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:
8	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
9	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

No data

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000107443	Chromatin interaction
ENSG00000200728	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10458746	0.84[ASN][1000 genomes]
rs1047370	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10509699	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10509703	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10786261	1.00[CEU][hapmap]
rs10786262	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882714	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882718	0.91[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10882728	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188566	0.81[ASN][1000 genomes]
rs11188572	0.83[ASN][1000 genomes]
rs11188575	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188578	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs11188579	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188580	0.86[ASN][1000 genomes]
rs11188581	0.84[ASN][1000 genomes]
rs11188582	0.90[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs11188583	0.90[ASN][1000 genomes]
rs11188593	0.90[ASN][1000 genomes]
rs11188594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188595	0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11188596	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188598	0.89[ASN][1000 genomes]
rs11188599	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs11188601	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188603	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188604	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188606	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188608	0.88[ASN][1000 genomes]
rs11188613	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188615	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188616	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11188618	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188623	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11188626	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188627	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188635	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188639	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11188656	0.91[CEU][hapmap]
rs11188657	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11597197	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11814327	0.91[CEU][hapmap]
rs12219508	0.87[CHB][hapmap]
rs12221239	0.83[ASN][1000 genomes]
rs12354762	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12359842	0.91[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12414081	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12569991	0.90[ASN][1000 genomes]
rs12570955	0.86[ASN][1000 genomes]
rs12572217	0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1336455	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111275	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1889921	0.84[ASN][1000 genomes]
rs1974251	0.80[ASN][1000 genomes]
rs2039616	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2085492	0.88[ASN][1000 genomes]
rs3814226	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs3961944	0.91[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4145226	0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs61858613	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs713070	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72474879	0.88[ASN][1000 genomes]
rs7903619	1.00[YRI][hapmap]
rs7913418	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs915506	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97849000-97850800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:97849000-97850800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr10:97849200-97850800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr10:97849600-97850800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:97850000-97850800	Flanking Active TSS	Dnd41	blood
6	chr10:97850200-97850800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
7	chr10:97850200-97850800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:97850200-97850800	ZNF genes & repeats	Thymus	Thymus
9	chr10:97850200-97850800	Flanking Active TSS	K562	blood
10	chr10:97850400-97850800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr10:97850400-97850800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:97850400-97850800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr10:97850400-97850800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:97850400-97850800	Bivalent/Poised TSS	Fetal Lung	lung
15	chr10:97850600-97850800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr10:97850600-97850800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr10:97850600-97850800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:97850600-97850800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:97850600-97850800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:97850600-97850800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr10:97850600-97850800	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr10:97850600-97850800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:97850600-97850800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:97850600-97850800	Active TSS	Adipose Nuclei	Adipose
25	chr10:97850600-97850800	Active TSS	Brain Cingulate Gyrus	brain
26	chr10:97850600-97850800	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr10:97850600-97850800	Active TSS	Brain Substantia Nigra	brain
28	chr10:97850600-97850800	Active TSS	Colon Smooth Muscle	Colon
29	chr10:97850600-97850800	Active TSS	Duodenum Mucosa	Duodenum
30	chr10:97850600-97850800	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr10:97850600-97850800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
32	chr10:97850600-97850800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:97850600-97850800	Enhancers	GM12878-XiMat	blood
34	chr10:97850600-97850800	Active TSS	Monocytes-CD14+_RO01746	blood
35	chr10:97850600-97852200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:97850600-97852600	Enhancers	HepG2	liver

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