Variant report

Variant	rs11188572
Chromosome Location	chr10:97805155-97805156
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:97804885-97805277	SH-SY5Y	brain:	n/a	chr10:97805118-97805125
2	MYC	chr10:97804396-97805170	MCF10A-Er-Src	breast:	n/a	chr10:97804737-97804747
3	POLR2A	chr10:97802667-97805275	MCF10A-Er-Src	breast:	n/a	n/a
4	GATA1	chr10:97804123-97805181	PBDE	blood:	n/a	chr10:97804788-97804798 chr10:97805118-97805125 chr10:97804782-97804803 chr10:97804785-97804801 chr10:97804785-97804801 chr10:97804852-97804862
5	IRF1	chr10:97804557-97805165	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97803734..97806722-chr10:97959272..97960926,2	K562	blood:
3	chr10:97803146..97804768-chr10:97804855..97808048,3	K562	blood:
4	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
5	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
6	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
7	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
8	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
9	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
10	chr10:97803632..97805225-chr10:97927626..97930343,2	K562	blood:
11	chr10:97803583..97805560-chr10:98074679..98076235,2	MCF-7	breast:

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10458746	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1047370	0.85[ASN][1000 genomes]
rs10509699	0.97[ASN][1000 genomes]
rs10786262	0.84[ASN][1000 genomes]
rs10882703	0.86[EUR][1000 genomes]
rs10882714	0.86[ASN][1000 genomes]
rs10882716	0.83[ASN][1000 genomes]
rs10882717	0.83[ASN][1000 genomes]
rs11188549	0.86[EUR][1000 genomes]
rs11188550	0.86[EUR][1000 genomes]
rs11188554	1.00[EUR][1000 genomes]
rs11188557	1.00[EUR][1000 genomes]
rs11188566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188580	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188581	0.93[ASN][1000 genomes]
rs11188582	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188583	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188593	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188594	0.82[ASN][1000 genomes]
rs11188595	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188598	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188599	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188603	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188608	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188615	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188616	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188623	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188639	0.83[ASN][1000 genomes]
rs11814171	1.00[EUR][1000 genomes]
rs12219508	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414081	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12569991	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12570955	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12572217	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1336455	0.83[ASN][1000 genomes]
rs17111275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1974251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2085492	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3814226	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4145226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72474879	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7898901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7913418	0.89[ASN][1000 genomes]
rs915506	0.89[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97802600-97805200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:97802600-97805200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:97802600-97805200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:97802600-97805800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:97802800-97805200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr10:97802800-97805200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:97802800-97805200	Active TSS	NHLF	lung
8	chr10:97803000-97805200	Active TSS	HSMMtube	muscle
9	chr10:97803000-97805400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr10:97803000-97805400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:97803000-97805400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:97803000-97805600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:97803000-97805600	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr10:97803200-97805200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:97803400-97805200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr10:97803600-97805400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:97804200-97805400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr10:97804200-97805600	Active TSS	Brain Germinal Matrix	brain
19	chr10:97804200-97805800	Flanking Active TSS	Dnd41	blood
20	chr10:97804400-97805200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:97804400-97805200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr10:97804400-97816600	Weak transcription	Esophagus	oesophagus
23	chr10:97804600-97805200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr10:97804600-97805200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr10:97804600-97805200	Flanking Active TSS	Fetal Brain Female	brain
26	chr10:97804600-97805200	Flanking Active TSS	NHDF-Ad	bronchial
27	chr10:97804600-97805400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:97804600-97805400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr10:97804600-97805400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr10:97804600-97805400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:97804600-97805400	Flanking Active TSS	K562	blood
32	chr10:97804600-97805400	Flanking Active TSS	NH-A	brain
33	chr10:97804600-97805600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:97804600-97806800	Weak transcription	Pancreas	Pancrea
35	chr10:97804600-97806800	Weak transcription	Spleen	Spleen
36	chr10:97804600-97810000	Weak transcription	Left Ventricle	heart
37	chr10:97804600-97810000	Weak transcription	Lung	lung
38	chr10:97804600-97816600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:97804600-97816600	Weak transcription	Placenta	Placenta
40	chr10:97804600-97816600	Weak transcription	Gastric	stomach
41	chr10:97804600-97816800	Weak transcription	Ovary	ovary
42	chr10:97804600-97817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:97804600-97817000	Weak transcription	Aorta	Aorta
44	chr10:97804600-97817000	Weak transcription	Psoas Muscle	Psoas
45	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
46	chr10:97804800-97805200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:97804800-97805200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr10:97804800-97805200	Enhancers	Brain Anterior Caudate	brain
49	chr10:97804800-97805200	Enhancers	Colon Smooth Muscle	Colon
50	chr10:97804800-97805200	Flanking Active TSS	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links