Variant report

Variant	rs11188550
Chromosome Location	chr10:97757097-97757098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10458746	0.86[EUR][1000 genomes]
rs10786254	1.00[ASN][1000 genomes]
rs10882703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10882706	1.00[ASN][1000 genomes]
rs11188544	1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11188549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188554	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188557	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188566	0.86[EUR][1000 genomes]
rs11188572	0.86[EUR][1000 genomes]
rs11188578	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11188580	0.86[EUR][1000 genomes]
rs11188582	0.86[EUR][1000 genomes]
rs11188583	0.86[EUR][1000 genomes]
rs11188593	0.86[EUR][1000 genomes]
rs11188595	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188598	0.86[EUR][1000 genomes]
rs11188599	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188603	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188608	0.86[EUR][1000 genomes]
rs11188615	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11188616	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11188623	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188639	1.00[CEU][hapmap]
rs11188657	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11814171	0.86[EUR][1000 genomes]
rs12219508	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12221239	0.86[EUR][1000 genomes]
rs12255122	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12414081	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12414410	1.00[ASN][1000 genomes]
rs12569991	0.86[EUR][1000 genomes]
rs12570955	0.86[EUR][1000 genomes]
rs12572217	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17111275	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs1974251	0.86[EUR][1000 genomes]
rs2085492	0.86[EUR][1000 genomes]
rs3814226	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4145226	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs72474879	0.86[EUR][1000 genomes]
rs7898901	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948147	chr10:97755109-97761062	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11188550	ENTPD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97755800-97765000	Weak transcription	Ovary	ovary

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