Variant report

Variant	rs12354762
Chromosome Location	chr10:97823286-97823287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97802616..97805266-chr10:97821271..97823572,3	MCF-7	breast:
2	chr10:97821278..97823934-chr10:97846711..97850876,3	K562	blood:
3	chr10:97822214..97824022-chr10:97848462..97851051,4	MCF-7	breast:
4	chr10:97821145..97824482-chr10:97888850..97891356,3	MCF-7	breast:
5	chr10:97821732..97826384-chr10:97888833..97893125,8	K562	blood:
6	chr10:97802806..97805803-chr10:97820815..97823410,3	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1047370	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10509703	0.82[EUR][1000 genomes]
rs10786262	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882709	0.88[ASN][1000 genomes]
rs10882714	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882716	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882717	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882718	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882728	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188552	0.88[ASN][1000 genomes]
rs11188575	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188579	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188594	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188596	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188601	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188604	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188606	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188613	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188618	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188626	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188627	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188635	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11597197	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12359842	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1336455	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2039616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961944	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61858613	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713070	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7913418	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs915506	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
2	chr10:97804800-97824200	Weak transcription	Small Intestine	intestine
3	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:97816400-97831400	Weak transcription	Right Atrium	heart
5	chr10:97816600-97823800	Strong transcription	Fetal Brain Female	brain
6	chr10:97818000-97823800	Weak transcription	Esophagus	oesophagus
7	chr10:97818000-97823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:97818000-97824400	Weak transcription	Lung	lung
9	chr10:97818000-97824800	Weak transcription	Fetal Kidney	kidney
10	chr10:97818000-97826200	Weak transcription	Gastric	stomach
11	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
13	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
14	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
15	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
16	chr10:97818200-97826800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:97818200-97832800	Weak transcription	HMEC	breast
18	chr10:97818200-97833200	Weak transcription	NHEK	skin
19	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
21	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
23	chr10:97818600-97825600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:97819000-97823800	Weak transcription	Fetal Brain Male	brain
25	chr10:97819200-97824800	Weak transcription	Fetal Lung	lung
26	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:97819400-97823800	Weak transcription	A549	lung
28	chr10:97819400-97824800	Weak transcription	NH-A	brain
29	chr10:97819400-97833400	Weak transcription	NHLF	lung
30	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:97819600-97823800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr10:97819600-97823800	Weak transcription	Placenta	Placenta
33	chr10:97819600-97824200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:97819600-97825600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:97819600-97828600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:97819600-97832600	Weak transcription	NHDF-Ad	bronchial
37	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:97819600-97848000	Weak transcription	HepG2	liver
39	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:97819600-97849400	Weak transcription	Ovary	ovary
43	chr10:97819800-97824200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
45	chr10:97819800-97841400	Weak transcription	Liver	Liver
46	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:97820200-97833400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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