Variant report

Variant	rs713070
Chromosome Location	chr10:97903347-97903348
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97888986..97892884-chr10:97902853..97905257,4	MCF-7	breast:
2	chr10:97887805..97893654-chr10:97893672..97904604,20	MCF-7	breast:
3	chr10:97899843..97903652-chr10:97906126..97909504,4	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1047370	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10491070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs10509695	1.00[JPT][hapmap]
rs10509700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10509701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10509703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786261	0.90[CEU][hapmap]
rs10786262	0.86[CEU][hapmap];0.83[MEX][hapmap]
rs10882716	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882717	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882718	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10882728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188531	1.00[JPT][hapmap]
rs11188575	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188579	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188594	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188601	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188604	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188606	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188618	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188626	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188632	0.94[ASN][1000 genomes]
rs11188635	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11591959	1.00[JPT][hapmap]
rs11593049	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11594595	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11595809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11597197	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[ASN][1000 genomes]
rs11598837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11599170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11814327	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs12354644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12354762	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12359842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12411569	1.00[JPT][hapmap]
rs12761705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[ASN][1000 genomes]
rs1336455	0.86[CEU][hapmap];0.83[MEX][hapmap];0.82[EUR][1000 genomes]
rs17382898	1.00[JPT][hapmap]
rs2039616	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2125060	0.94[ASN][1000 genomes]
rs3961944	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4344425	1.00[JPT][hapmap]
rs61858613	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7896077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[ASN][1000 genomes]
rs7913418	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs915506	0.86[CEU][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
6	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97891000-97906400	Weak transcription	Right Ventricle	heart
8	chr10:97891000-97906600	Weak transcription	Psoas Muscle	Psoas
9	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
10	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
13	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
14	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
15	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:97891400-97918200	Weak transcription	NHLF	lung
17	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
19	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
20	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:97892400-97909600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:97892600-97907800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:97892600-97909800	Strong transcription	Liver	Liver
25	chr10:97892800-97907800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr10:97892800-97909400	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:97893000-97903600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:97893000-97904000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr10:97893000-97904000	Strong transcription	Fetal Muscle Leg	muscle
31	chr10:97893000-97907200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr10:97893000-97907400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:97893000-97907600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:97893000-97907600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:97893000-97907800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:97893000-97907800	Strong transcription	Primary B cells from cord blood	blood
37	chr10:97893000-97908400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:97893000-97909400	Strong transcription	Fetal Intestine Large	intestine
39	chr10:97893000-97909800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr10:97893200-97903800	Strong transcription	Primary T cells from cord blood	blood
41	chr10:97893200-97904200	Strong transcription	Adipose Nuclei	Adipose
42	chr10:97893200-97904600	Strong transcription	Placenta	Placenta
43	chr10:97893200-97907600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:97893200-97907800	Strong transcription	Fetal Thymus	thymus
45	chr10:97893400-97904000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:97893400-97907800	Strong transcription	Dnd41	blood
47	chr10:97893600-97905800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:97894600-97908400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:97895000-97911000	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:97895000-97911200	Weak transcription	Lung	lung

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