Variant report

Variant	rs11599662
Chromosome Location	chr10:97834454-97834455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97831211..97833750-chr10:97833757..97836431,3	MCF-7	breast:
2	chr10:97829922..97834594-chr10:97848296..97851749,4	K562	blood:
3	chr10:97833877..97835532-chr10:97836303..97838930,2	MCF-7	breast:
4	chr10:97831034..97837353-chr10:97838908..97844842,8	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10450395	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491070	0.95[YRI][hapmap]
rs10509700	0.95[YRI][hapmap]
rs10509701	1.00[YRI][hapmap]
rs10882723	1.00[YRI][hapmap]
rs11188622	0.95[YRI][hapmap]
rs11188631	1.00[YRI][hapmap]
rs11591374	0.82[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11595327	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.95[YRI][hapmap]
rs11596126	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	1.00[YRI][hapmap]
rs11598837	0.95[YRI][hapmap]
rs11599170	0.95[YRI][hapmap]
rs12266567	1.00[ASN][1000 genomes]
rs12354644	0.95[YRI][hapmap]
rs12761705	1.00[YRI][hapmap]
rs12768772	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	0.87[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778345	0.93[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783483	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784299	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383738	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34084924	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34091243	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34519673	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603628	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660132	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57334361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869173	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66728103	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081169	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096164	0.87[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7896077	1.00[YRI][hapmap]
rs7916068	0.88[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918957	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
2	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
3	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
4	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
5	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
8	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:97819600-97848000	Weak transcription	HepG2	liver
12	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:97819600-97849400	Weak transcription	Ovary	ovary
16	chr10:97819800-97841400	Weak transcription	Liver	Liver
17	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
21	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:97822400-97834600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:97822600-97841800	Weak transcription	Adipose Nuclei	Adipose
29	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
31	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
34	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
38	chr10:97825800-97848200	Weak transcription	Fetal Intestine Small	intestine
39	chr10:97831200-97836200	Enhancers	K562	blood
40	chr10:97831400-97834800	Enhancers	HUVEC	blood vessel
41	chr10:97832000-97835400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:97832600-97834600	Enhancers	NHDF-Ad	bronchial
43	chr10:97832800-97834800	Enhancers	Thymus	Thymus
44	chr10:97833400-97834600	Enhancers	Fetal Thymus	thymus
45	chr10:97833800-97834600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:97833800-97834600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:97833800-97834800	Enhancers	Dnd41	blood
48	chr10:97833800-97835200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:97833800-97841400	Weak transcription	Primary T cells from cord blood	blood
50	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood

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