Variant report

Variant	rs17383738
Chromosome Location	chr10:97772358-97772359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10450395	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491070	0.84[YRI][hapmap]
rs10509700	0.84[YRI][hapmap]
rs10509701	0.90[YRI][hapmap]
rs10882723	0.90[YRI][hapmap]
rs11188622	0.84[YRI][hapmap]
rs11188631	0.89[YRI][hapmap]
rs11591374	0.82[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap]
rs11595327	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595809	0.84[YRI][hapmap]
rs11596126	1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598546	0.89[YRI][hapmap]
rs11598837	0.83[YRI][hapmap]
rs11599170	0.84[YRI][hapmap]
rs11599662	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266567	1.00[ASN][1000 genomes]
rs12354644	0.84[YRI][hapmap]
rs12761705	0.90[YRI][hapmap]
rs12768772	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771933	0.87[CEU][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs12778345	0.93[CEU][hapmap];0.82[LWK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs12783483	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784299	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34084924	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34519673	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34603628	1.00[ASN][1000 genomes]
rs34660132	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846723	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35038457	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35894075	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57334361	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66728103	1.00[ASN][1000 genomes]
rs7081169	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096164	0.87[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs72821977	1.00[ASN][1000 genomes]
rs72823717	1.00[ASN][1000 genomes]
rs7896077	0.90[YRI][hapmap]
rs7916068	0.87[CEU][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs7918957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17383738	ZNF518A	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97765400-97777200	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:97767600-97786600	Weak transcription	Aorta	Aorta
3	chr10:97769800-97776600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:97770600-97776800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:97771200-97777200	Weak transcription	Left Ventricle	heart

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