Variant report

Variant	rs2168733
Chromosome Location	chr10:97958880-97958881
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10491069	0.82[ASN][1000 genomes]
rs10491070	1.00[JPT][hapmap]
rs10509700	1.00[JPT][hapmap]
rs10509701	1.00[JPT][hapmap]
rs10509703	1.00[JPT][hapmap]
rs10882718	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs10882723	1.00[JPT][hapmap]
rs10882728	1.00[JPT][hapmap]
rs10882743	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188575	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11188596	1.00[JPT][hapmap]
rs11188604	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs11188622	1.00[JPT][hapmap]
rs11188627	1.00[JPT][hapmap]
rs11188631	1.00[JPT][hapmap]
rs11188635	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs11188656	1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188661	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188662	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11591959	1.00[JPT][hapmap]
rs11594595	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11595809	1.00[JPT][hapmap]
rs11598546	1.00[JPT][hapmap]
rs11598837	1.00[JPT][hapmap]
rs11599170	1.00[JPT][hapmap]
rs12354644	1.00[JPT][hapmap]
rs12359842	1.00[JPT][hapmap]
rs12761705	1.00[JPT][hapmap]
rs12762814	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3961944	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs713070	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs7896077	1.00[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
2	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
3	chr10:97948200-97963600	Weak transcription	Gastric	stomach
4	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
8	chr10:97948800-97959200	Weak transcription	Spleen	Spleen
9	chr10:97949600-97989200	Strong transcription	Liver	Liver
10	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus
11	chr10:97950600-97960600	Weak transcription	Small Intestine	intestine
12	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
13	chr10:97952200-97971800	Strong transcription	Primary B cells from cord blood	blood
14	chr10:97953600-97967000	Weak transcription	Colonic Mucosa	Colon
15	chr10:97953600-97967800	Strong transcription	GM12878-XiMat	blood
16	chr10:97954600-97964200	Weak transcription	Adipose Nuclei	Adipose
17	chr10:97955400-97971800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr10:97956600-97959800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97957000-97964400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:97957400-97959000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:97957600-97988400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:97958200-97960000	Strong transcription	Fetal Intestine Small	intestine
23	chr10:97958800-97971400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr10:97958800-97976400	Strong transcription	Fetal Intestine Large	intestine

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