Variant report

Variant	rs11732129
Chromosome Location	chr4:166436282-166436283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11732206	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732504	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11736487	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17631042	0.81[JPT][hapmap]
rs17631193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28655188	0.87[ASN][1000 genomes]
rs72705414	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72705416	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72705417	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166429200-166438000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:166431600-166437400	Weak transcription	Adipose Nuclei	Adipose
3	chr4:166435000-166439200	Weak transcription	Hela-S3	cervix
4	chr4:166435200-166437800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:166435200-166440800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:166435400-166436800	Enhancers	HUVEC	blood vessel
7	chr4:166436000-166437400	Enhancers	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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