Variant report

Variant	rs17631042
Chromosome Location	chr4:166417095-166417096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11725615	1.00[AFR][1000 genomes]
rs11728545	1.00[AFR][1000 genomes]
rs11732206	0.81[AMR][1000 genomes]
rs11732504	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11734444	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs11734732	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11735345	1.00[AFR][1000 genomes]
rs11736487	0.81[AMR][1000 genomes]
rs11737095	1.00[CEU][hapmap]
rs17502660	1.00[AFR][1000 genomes]
rs17503957	1.00[AFR][1000 genomes]
rs17587323	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17588412	1.00[AFR][1000 genomes]
rs17687429	1.00[AFR][1000 genomes]
rs2276931	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2304592	1.00[CEU][hapmap]
rs28496971	0.89[EUR][1000 genomes]
rs3775313	1.00[AFR][1000 genomes]
rs4690821	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72689459	1.00[AFR][1000 genomes]
rs72689461	1.00[AFR][1000 genomes]
rs72689462	1.00[AFR][1000 genomes]
rs72703674	1.00[AFR][1000 genomes]
rs72705404	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72705405	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72705408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72705412	1.00[AFR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166392200-166419600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166395600-166419400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:166396400-166425400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:166397600-166427600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:166397600-166428200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:166398000-166427000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:166398200-166420000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:166399200-166424600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:166403600-166424800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:166403800-166423200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:166405800-166419800	Weak transcription	Pancreas	Pancrea
12	chr4:166406200-166424000	Weak transcription	Left Ventricle	heart
13	chr4:166409400-166420600	Weak transcription	Fetal Stomach	stomach
14	chr4:166409600-166423400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:166409600-166428200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:166409800-166419800	Weak transcription	Aorta	Aorta
17	chr4:166410000-166419600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:166410200-166419800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:166410200-166419800	Weak transcription	Brain Germinal Matrix	brain
20	chr4:166410400-166419600	Weak transcription	Brain Anterior Caudate	brain
21	chr4:166410800-166420200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:166411400-166419800	Weak transcription	Brain Substantia Nigra	brain
23	chr4:166411400-166423200	Weak transcription	Hela-S3	cervix
24	chr4:166414200-166420000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:166414200-166427000	Weak transcription	Fetal Heart	heart
26	chr4:166414800-166420600	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:166415000-166418800	Weak transcription	NHLF	lung
28	chr4:166415000-166419800	Weak transcription	Adipose Nuclei	Adipose
29	chr4:166415000-166424800	Weak transcription	Ovary	ovary
30	chr4:166415000-166425400	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:166415400-166424800	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:166415600-166419800	Weak transcription	Fetal Brain Male	brain
33	chr4:166415600-166421200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:166416000-166419800	Weak transcription	Fetal Brain Female	brain
35	chr4:166416200-166419800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:166416400-166420200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:166416800-166422400	Weak transcription	HepG2	liver

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