Variant report

Variant	rs2276931
Chromosome Location	chr4:166408517-166408518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10025269	0.90[AFR][1000 genomes]
rs11734444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11734732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11737095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17631042	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17686888	1.00[MEX][hapmap]
rs17687250	1.00[MEX][hapmap]
rs17687429	0.86[CHB][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs2304592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28496971	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28507056	0.90[AFR][1000 genomes]
rs28545152	0.90[AFR][1000 genomes]
rs28633490	0.90[AFR][1000 genomes]
rs3775313	0.86[CHB][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs3775315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690818	1.00[MEX][hapmap]
rs4690821	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4691194	1.00[MEX][hapmap]
rs72703674	0.84[EUR][1000 genomes]
rs72703678	0.81[EUR][1000 genomes]
rs72703686	0.84[EUR][1000 genomes]
rs72705403	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72705404	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72705405	0.88[EUR][1000 genomes]
rs72705408	0.81[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166386400-166414400	Weak transcription	Fetal Brain Male	brain
2	chr4:166389800-166414600	Weak transcription	Ovary	ovary
3	chr4:166391600-166414400	Weak transcription	Fetal Kidney	kidney
4	chr4:166392200-166419600	Weak transcription	Brain Angular Gyrus	brain
5	chr4:166393600-166408600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:166394600-166408600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:166395400-166408600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:166395600-166419400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:166396400-166425400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:166397200-166408800	Weak transcription	Fetal Stomach	stomach
11	chr4:166397600-166427600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:166397600-166428200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:166398000-166409400	Weak transcription	Brain Germinal Matrix	brain
14	chr4:166398000-166427000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:166398200-166420000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:166399200-166424600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:166401200-166412800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:166403000-166408600	Weak transcription	Brain Substantia Nigra	brain
19	chr4:166403400-166412000	Strong transcription	HepG2	liver
20	chr4:166403600-166424800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:166403800-166423200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:166404000-166414800	Weak transcription	Fetal Lung	lung
23	chr4:166404200-166408600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:166404200-166414000	Weak transcription	Fetal Intestine Small	intestine
25	chr4:166405800-166419800	Weak transcription	Pancreas	Pancrea
26	chr4:166406200-166424000	Weak transcription	Left Ventricle	heart
27	chr4:166406400-166414200	Weak transcription	Fetal Intestine Large	intestine
28	chr4:166406600-166410800	Strong transcription	Fetal Brain Female	brain
29	chr4:166407000-166409600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:166407200-166409800	Strong transcription	Aorta	Aorta
31	chr4:166407600-166408800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr4:166407800-166410800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:166408000-166408800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:166408200-166408600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr4:166408200-166410000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:166408200-166410800	Strong transcription	Pancreatic Islets	Pancreatic Islet
37	chr4:166408400-166408800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr4:166408400-166410800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links