Variant report

Variant	rs72703678
Chromosome Location	chr4:166386499-166386500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:166386013..166387513-chr4:166389394..166391512,2	MCF-7	breast:
2	chr4:166128151..166130225-chr4:166385468..166387659,2	K562	blood:
3	chr4:166052098..166053052-chr4:166385627..166386880,10	K562	blood:
4	chr4:166305550..166306325-chr4:166386099..166386624,2	MCF-7	breast:
5	chr4:166380861..166382670-chr4:166385942..166388896,2	MCF-7	breast:
6	chr4:166297509..166301648-chr4:166381401..166387402,6	MCF-7	breast:
7	chr4:166052062..166053035-chr4:166385270..166386544,3	MCF-7	breast:
8	chr4:166276683..166277608-chr4:166385622..166387104,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction
ENSG00000170088	Chromatin interaction
ENSG00000109466	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11734444	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11734732	0.81[EUR][1000 genomes]
rs17502660	0.92[EUR][1000 genomes]
rs17687429	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276931	0.81[EUR][1000 genomes]
rs3775313	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690821	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72703674	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72703686	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705403	0.81[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166378800-166386800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:166380000-166388800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:166380200-166390200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:166381800-166391000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:166382800-166388800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:166382800-166391400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:166383000-166387200	Weak transcription	HepG2	liver
8	chr4:166383000-166388400	Weak transcription	Aorta	Aorta
9	chr4:166383000-166389800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:166383000-166391000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:166383200-166389000	Weak transcription	Ovary	ovary
12	chr4:166383200-166391400	Weak transcription	Fetal Lung	lung
13	chr4:166383600-166389000	Weak transcription	Fetal Stomach	stomach
14	chr4:166383800-166389800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:166384200-166389200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:166384200-166389400	Weak transcription	Brain Germinal Matrix	brain
17	chr4:166384200-166390200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:166384200-166391800	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:166384400-166389000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:166385800-166387200	Weak transcription	Brain Angular Gyrus	brain
21	chr4:166385800-166391400	Weak transcription	Pancreas	Pancrea
22	chr4:166386000-166388400	Weak transcription	Fetal Brain Female	brain
23	chr4:166386000-166389200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:166386000-166391600	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:166386000-166392600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:166386000-166393000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr4:166386400-166389000	Weak transcription	Brain Anterior Caudate	brain
28	chr4:166386400-166389000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:166386400-166394000	Weak transcription	Brain Substantia Nigra	brain
30	chr4:166386400-166414400	Weak transcription	Fetal Brain Male	brain

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