Variant report

Variant	rs17687429
Chromosome Location	chr4:166390807-166390808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166386013..166387513-chr4:166389394..166391512,2	MCF-7	breast:
2	chr4:166030658..166033358-chr4:166390632..166393023,2	K562	blood:
3	chr4:166389355..166390868-chr4:166395742..166398705,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10517847	0.82[EUR][1000 genomes]
rs11734444	0.86[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11734732	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs11737095	0.86[CHB][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17502660	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17587323	1.00[AFR][1000 genomes]
rs17631042	1.00[AFR][1000 genomes]
rs17686888	1.00[MEX][hapmap]
rs17687250	1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2276931	0.86[CHB][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs2304592	0.86[CHB][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs3775313	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775315	0.85[CHB][hapmap]
rs4690818	1.00[MEX][hapmap];0.82[EUR][1000 genomes]
rs4690821	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691194	1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs4691198	0.82[EUR][1000 genomes]
rs72703624	0.82[EUR][1000 genomes]
rs72703639	0.82[EUR][1000 genomes]
rs72703653	0.82[EUR][1000 genomes]
rs72703657	0.82[EUR][1000 genomes]
rs72703674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72703678	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705403	0.83[EUR][1000 genomes]
rs72705404	1.00[AFR][1000 genomes]
rs72705405	1.00[AFR][1000 genomes]
rs72705408	1.00[AFR][1000 genomes]
rs72705412	1.00[AFR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166381800-166391000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:166382800-166391400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166383000-166391000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:166383200-166391400	Weak transcription	Fetal Lung	lung
5	chr4:166384200-166391800	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:166385800-166391400	Weak transcription	Pancreas	Pancrea
7	chr4:166386000-166391600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:166386000-166392600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:166386000-166393000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:166386400-166394000	Weak transcription	Brain Substantia Nigra	brain
11	chr4:166386400-166414400	Weak transcription	Fetal Brain Male	brain
12	chr4:166387200-166391600	Strong transcription	HepG2	liver
13	chr4:166387400-166391400	Weak transcription	Brain Angular Gyrus	brain
14	chr4:166387800-166391800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:166388200-166397000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:166388400-166391600	Strong transcription	Fetal Brain Female	brain
17	chr4:166388400-166391800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:166388600-166392000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:166388800-166391400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:166388800-166392200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:166389000-166392800	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr4:166389000-166393600	Strong transcription	Brain Anterior Caudate	brain
23	chr4:166389200-166392200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:166389400-166391400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:166389400-166391400	Strong transcription	Brain Germinal Matrix	brain
26	chr4:166389600-166391800	Weak transcription	Left Ventricle	heart
27	chr4:166389800-166393200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:166389800-166414600	Weak transcription	Ovary	ovary
29	chr4:166390000-166395000	Weak transcription	Esophagus	oesophagus
30	chr4:166390400-166391600	Strong transcription	Fetal Stomach	stomach
31	chr4:166390400-166392400	Strong transcription	Pancreatic Islets	Pancreatic Islet
32	chr4:166390400-166393200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:166390400-166397000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:166390600-166407200	Weak transcription	Aorta	Aorta
35	chr4:166390800-166391800	Weak transcription	Fetal Intestine Large	intestine

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