Variant report

Variant	rs17686888
Chromosome Location	chr4:166325399-166325400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166298755..166301718-chr4:166324143..166325651,2	MCF-7	breast:
2	chr4:166324892..166326532-chr4:166339338..166341206,2	K562	blood:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10517847	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17489060	1.00[AFR][1000 genomes]
rs17489067	1.00[AFR][1000 genomes]
rs17585655	1.00[AFR][1000 genomes]
rs17686918	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17687037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17687250	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17687429	1.00[MEX][hapmap]
rs2053276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2276931	1.00[MEX][hapmap]
rs3775313	1.00[MEX][hapmap]
rs4690818	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4690820	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4690821	1.00[MEX][hapmap]
rs4691194	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4691198	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72701627	1.00[AFR][1000 genomes]
rs72701632	1.00[AFR][1000 genomes]
rs72701634	1.00[AFR][1000 genomes]
rs72701636	1.00[AFR][1000 genomes]
rs72701637	1.00[AFR][1000 genomes]
rs72701639	1.00[AFR][1000 genomes]
rs72701642	1.00[AFR][1000 genomes]
rs72701645	1.00[AFR][1000 genomes]
rs72701652	1.00[AFR][1000 genomes]
rs72701657	1.00[AFR][1000 genomes]
rs72701659	1.00[AFR][1000 genomes]
rs72701664	1.00[AFR][1000 genomes]
rs72701670	1.00[AFR][1000 genomes]
rs72701672	1.00[AFR][1000 genomes]
rs72701673	1.00[AFR][1000 genomes]
rs72701675	1.00[AFR][1000 genomes]
rs72701694	0.95[EUR][1000 genomes]
rs72703619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72703624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72703639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72703653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72703657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7656675	1.00[AFR][1000 genomes]
rs7657847	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964109	chr4:166325257-166327215	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:166315800-166328000	Weak transcription	Ovary	ovary
5	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:166320200-166325600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:166322800-166327000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:166323000-166325600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:166323200-166326000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:166323400-166325800	Enhancers	Fetal Brain Male	brain
17	chr4:166323400-166326200	Strong transcription	HepG2	liver
18	chr4:166323600-166330000	Weak transcription	Brain Anterior Caudate	brain
19	chr4:166323800-166325400	Weak transcription	Brain Germinal Matrix	brain
20	chr4:166323800-166325600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:166324400-166326800	Weak transcription	Fetal Intestine Small	intestine
22	chr4:166324800-166326200	Strong transcription	Fetal Stomach	stomach
23	chr4:166325200-166326200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:166325200-166326600	Strong transcription	Aorta	Aorta
25	chr4:166325200-166327000	Strong transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:166325200-166327200	Genic enhancers	Fetal Brain Female	brain

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