Variant report

Variant	rs2053276
Chromosome Location	chr4:166327487-166327488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10517847	0.81[AMR][1000 genomes]
rs17686888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17686918	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17687037	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17687250	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs2053277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4690818	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs4690820	1.00[JPT][hapmap]
rs4691194	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs4691198	0.81[AMR][1000 genomes]
rs72701694	0.95[EUR][1000 genomes]
rs72703619	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72703624	0.81[AMR][1000 genomes]
rs72703639	0.81[AMR][1000 genomes]
rs72703653	0.81[AMR][1000 genomes]
rs72703657	0.81[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166315800-166328000	Weak transcription	Ovary	ovary
4	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
10	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:166323600-166330000	Weak transcription	Brain Anterior Caudate	brain
12	chr4:166325800-166334600	Weak transcription	Fetal Brain Male	brain
13	chr4:166326000-166339000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:166326200-166331800	Weak transcription	Fetal Stomach	stomach
15	chr4:166326200-166332600	Weak transcription	HepG2	liver
16	chr4:166326400-166338800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:166326600-166328200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:166326600-166337200	Weak transcription	Aorta	Aorta
19	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
20	chr4:166327000-166332000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:166327200-166334800	Weak transcription	Fetal Brain Female	brain
22	chr4:166327400-166339200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links