Variant report

Variant	rs4690820
Chromosome Location	chr4:166361780-166361781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166361690..166363243-chr4:166374413..166376065,2	MCF-7	breast:
2	chr4:166353322..166356417-chr4:166360672..166362534,3	MCF-7	breast:

rs_ID	r²[population]
rs10024905	1.00[MEX][hapmap]
rs17686888	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2053276	1.00[JPT][hapmap]
rs2053277	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4691199	1.00[EUR][1000 genomes]

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:166342800-166364000	Weak transcription	HepG2	liver
4	chr4:166348400-166361800	Weak transcription	Aorta	Aorta
5	chr4:166352600-166366400	Weak transcription	Pancreas	Pancrea
6	chr4:166359400-166362000	Enhancers	Brain Anterior Caudate	brain
7	chr4:166359400-166362600	Enhancers	Fetal Brain Female	brain
8	chr4:166359800-166362600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:166359800-166363000	Enhancers	Fetal Brain Male	brain
10	chr4:166360000-166361800	Enhancers	Brain Cingulate Gyrus	brain
11	chr4:166360000-166362400	Enhancers	Brain Hippocampus Middle	brain
12	chr4:166360000-166365400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:166360200-166362000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:166360200-166362000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:166360200-166363000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:166360400-166361800	Enhancers	Brain Substantia Nigra	brain
17	chr4:166360600-166361800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:166360600-166361800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:166360600-166362200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr4:166360800-166361800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:166360800-166362200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:166360800-166362200	Enhancers	Fetal Stomach	stomach
23	chr4:166360800-166363000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr4:166361000-166361800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:166361000-166362000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:166361000-166362000	Enhancers	Colon Smooth Muscle	Colon
27	chr4:166361000-166362200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr4:166361000-166362200	Enhancers	Fetal Lung	lung
29	chr4:166361000-166362400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:166361000-166362400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:166361000-166362400	Enhancers	Brain Angular Gyrus	brain
32	chr4:166361200-166362000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr4:166361200-166362000	Enhancers	Osteobl	bone
34	chr4:166361200-166362200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:166361200-166362200	Enhancers	NHEK	skin
36	chr4:166361200-166362400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr4:166361200-166362400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:166361200-166362800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr4:166361400-166362000	Flanking Active TSS	NH-A	brain
40	chr4:166361400-166362200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:166361400-166362200	Enhancers	HUVEC	blood vessel
42	chr4:166361400-166362600	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr4:166361600-166362000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr4:166361600-166362000	Active TSS	Hela-S3	cervix
45	chr4:166361600-166362000	Flanking Active TSS	HMEC	breast
46	chr4:166361600-166362000	Enhancers	HSMMtube	muscle
47	chr4:166361600-166362200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:166361600-166362200	Active TSS	Stomach Smooth Muscle	stomach
49	chr4:166361600-166362200	Enhancers	A549	lung
50	chr4:166361600-166362200	Enhancers	NHLF	lung

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