Variant report

Variant	rs72703619
Chromosome Location	chr4:166339800-166339801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166300182..166301937-chr4:166338452..166341339,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10517847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17489060	1.00[AFR][1000 genomes]
rs17489067	1.00[AFR][1000 genomes]
rs17585655	1.00[AFR][1000 genomes]
rs17686888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17686918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17687037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17687250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2053276	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4690818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4691194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4691198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72701627	1.00[AFR][1000 genomes]
rs72701632	1.00[AFR][1000 genomes]
rs72701634	1.00[AFR][1000 genomes]
rs72701636	1.00[AFR][1000 genomes]
rs72701637	1.00[AFR][1000 genomes]
rs72701639	1.00[AFR][1000 genomes]
rs72701642	1.00[AFR][1000 genomes]
rs72701645	1.00[AFR][1000 genomes]
rs72701652	1.00[AFR][1000 genomes]
rs72701657	1.00[AFR][1000 genomes]
rs72701659	1.00[AFR][1000 genomes]
rs72701664	1.00[AFR][1000 genomes]
rs72701670	1.00[AFR][1000 genomes]
rs72701672	1.00[AFR][1000 genomes]
rs72701673	1.00[AFR][1000 genomes]
rs72701675	1.00[AFR][1000 genomes]
rs72701694	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72703611	0.94[ASN][1000 genomes]
rs72703624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72703653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7656675	1.00[AFR][1000 genomes]
rs7657847	1.00[AFR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:166334800-166342600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:166334800-166348000	Weak transcription	Pancreas	Pancrea
5	chr4:166335000-166342400	Weak transcription	HepG2	liver
6	chr4:166337200-166340000	Enhancers	Fetal Brain Male	brain
7	chr4:166337400-166348200	Weak transcription	Aorta	Aorta
8	chr4:166337600-166340000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:166337600-166346600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:166338000-166339800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr4:166338400-166340200	Weak transcription	Brain Anterior Caudate	brain
12	chr4:166338600-166340600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:166339000-166340000	Enhancers	Brain Hippocampus Middle	brain
14	chr4:166339200-166340000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:166339600-166339800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:166339600-166340000	Enhancers	Fetal Brain Female	brain
17	chr4:166339600-166342400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:166339600-166342400	Weak transcription	Brain Substantia Nigra	brain
19	chr4:166339600-166344200	Weak transcription	Brain Angular Gyrus	brain
20	chr4:166339800-166342400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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