Variant report

Variant	rs7656675
Chromosome Location	chr4:166277561-166277562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:166276916-166277736	SK-N-SH	brain:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
2	SMC3	chr4:166276854-166277828	SK-N-SH	brain:	n/a	chr4:166277277-166277291 chr4:166277282-166277289
3	RAD21	chr4:166276990-166277627	HCT-116	colon:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
4	RAD21	chr4:166276939-166277584	HCT-116	colon:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
5	CTCF	chr4:166276911-166277666	HCT-116	colon:	n/a	chr4:166277275-166277293 chr4:166277278-166277291 chr4:166277277-166277298
6	CTCF	chr4:166277001-166277561	HCT-116	colon:	n/a	chr4:166277275-166277293 chr4:166277278-166277291 chr4:166277277-166277298
7	RAD21	chr4:166277068-166277573	MCF-7	breast:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
8	CTCF	chr4:166277440-166277590	NHLF	lung:	n/a	n/a
9	RAD21	chr4:166277068-166277597	Hela-S3	cervix:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
10	RAD21	chr4:166276961-166277625	HepG2	liver:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
11	STAT3	chr4:166277372-166277579	MCF10A-Er-Src	breast:	n/a	n/a
12	RAD21	chr4:166276940-166277641	ECC-1	luminal epithelium:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
13	RAD21	chr4:166276991-166277605	ECC-1	luminal epithelium:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
14	CTCF	chr4:166276791-166277674	SK-N-SH	brain:	n/a	chr4:166277275-166277293 chr4:166277278-166277291 chr4:166277277-166277298
15	RAD21	chr4:166277008-166277589	H1-hESC	embryonic stem cell:	n/a	chr4:166277276-166277295 chr4:166277275-166277289
16	CTCF	chr4:166276920-166277616	A549	lung:	n/a	chr4:166277275-166277293 chr4:166277278-166277291 chr4:166277277-166277298

No.	Distal block	Cell Line	Cell type
1	chr4:166276683..166277608-chr4:166385622..166387104,5	MCF-7	breast:
2	chr4:166277287..166279356-chr4:166299374..166301924,3	MCF-7	breast:
3	chr4:166276597..166279121-chr4:166279967..166282162,2	K562	blood:

Variant related genes	Relation type
CPE	TF binding region
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10015275	0.94[EUR][1000 genomes]
rs10021532	0.92[EUR][1000 genomes]
rs10025377	0.94[EUR][1000 genomes]
rs10031858	0.92[EUR][1000 genomes]
rs10517847	1.00[AFR][1000 genomes]
rs13106028	0.93[EUR][1000 genomes]
rs13137171	0.92[EUR][1000 genomes]
rs17046337	0.94[EUR][1000 genomes]
rs17046351	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17489060	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17489067	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17585655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17585739	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17686888	1.00[AFR][1000 genomes]
rs17686918	1.00[AFR][1000 genomes]
rs17687037	1.00[AFR][1000 genomes]
rs17687250	1.00[AFR][1000 genomes]
rs28484900	0.94[EUR][1000 genomes]
rs28735257	0.94[EUR][1000 genomes]
rs4690818	1.00[AFR][1000 genomes]
rs4691194	1.00[AFR][1000 genomes]
rs4691198	1.00[AFR][1000 genomes]
rs6536909	0.96[EUR][1000 genomes]
rs6817186	0.92[EUR][1000 genomes]
rs6842704	0.98[EUR][1000 genomes]
rs6846664	0.94[EUR][1000 genomes]
rs6853552	1.00[EUR][1000 genomes]
rs72701627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701628	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72701629	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72701630	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72701632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72701634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72701636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72701637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701664	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72701670	1.00[AFR][1000 genomes]
rs72701672	1.00[AFR][1000 genomes]
rs72701673	1.00[AFR][1000 genomes]
rs72701675	1.00[AFR][1000 genomes]
rs72703619	1.00[AFR][1000 genomes]
rs72703624	1.00[AFR][1000 genomes]
rs72703639	1.00[AFR][1000 genomes]
rs72703653	1.00[AFR][1000 genomes]
rs72703657	1.00[AFR][1000 genomes]
rs7657847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671176	0.98[EUR][1000 genomes]
rs7679322	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7679808	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7696111	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:166276600-166277600	Enhancers	HepG2	liver
3	chr4:166277000-166277800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:166277200-166277800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr4:166277400-166278400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:166277400-166279800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:166277400-166280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:166277400-166280400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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