Variant report

Variant	rs6842704
Chromosome Location	chr4:166275099-166275100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10015275	0.92[EUR][1000 genomes]
rs10021532	0.91[EUR][1000 genomes]
rs10025377	0.92[EUR][1000 genomes]
rs10031858	0.91[EUR][1000 genomes]
rs11940090	1.00[ASN][1000 genomes]
rs12506365	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs13106028	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046337	0.92[EUR][1000 genomes]
rs17046351	0.98[EUR][1000 genomes]
rs17585655	0.92[EUR][1000 genomes]
rs17585739	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs28484900	0.92[EUR][1000 genomes]
rs28735257	0.92[EUR][1000 genomes]
rs4690813	1.00[ASN][1000 genomes]
rs4691187	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6536907	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6536908	1.00[ASN][1000 genomes]
rs6536909	0.98[EUR][1000 genomes]
rs6817186	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6846664	0.92[EUR][1000 genomes]
rs6853552	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs72701627	0.91[EUR][1000 genomes]
rs72701628	0.92[EUR][1000 genomes]
rs72701629	0.92[EUR][1000 genomes]
rs72701630	0.92[EUR][1000 genomes]
rs72701632	0.94[EUR][1000 genomes]
rs72701634	0.94[EUR][1000 genomes]
rs72701636	0.94[EUR][1000 genomes]
rs72701637	0.98[EUR][1000 genomes]
rs72701639	0.98[EUR][1000 genomes]
rs72701642	0.98[EUR][1000 genomes]
rs72701645	0.98[EUR][1000 genomes]
rs72701652	0.96[EUR][1000 genomes]
rs72701657	0.98[EUR][1000 genomes]
rs72701659	0.98[EUR][1000 genomes]
rs72701664	0.98[EUR][1000 genomes]
rs7656675	0.98[EUR][1000 genomes]
rs7657847	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7671176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677572	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7679322	0.87[EUR][1000 genomes]
rs7679808	0.92[EUR][1000 genomes]
rs7696111	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs934814	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv2763404	chr4:166265940-166275340	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:166270000-166276800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:166273200-166276600	Weak transcription	HepG2	liver
4	chr4:166274600-166275600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:166274800-166275400	Enhancers	Monocytes-CD14+_RO01746	blood

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