Variant report

Variant	rs17046351
Chromosome Location	chr4:166283332-166283333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10015275	0.91[EUR][1000 genomes]
rs10021532	0.89[EUR][1000 genomes]
rs10025377	0.91[EUR][1000 genomes]
rs10031858	0.89[EUR][1000 genomes]
rs13106028	0.93[EUR][1000 genomes]
rs13137171	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17046337	0.91[EUR][1000 genomes]
rs17489060	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17489067	1.00[CHB][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs17585655	0.90[EUR][1000 genomes]
rs17585739	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs28484900	0.91[EUR][1000 genomes]
rs28735257	0.91[EUR][1000 genomes]
rs6536909	0.96[EUR][1000 genomes]
rs6817186	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs6842704	0.98[EUR][1000 genomes]
rs6846664	0.91[EUR][1000 genomes]
rs6853552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs72701627	0.89[EUR][1000 genomes]
rs72701628	0.90[EUR][1000 genomes]
rs72701629	0.90[EUR][1000 genomes]
rs72701630	0.90[EUR][1000 genomes]
rs72701632	0.92[EUR][1000 genomes]
rs72701634	0.92[EUR][1000 genomes]
rs72701636	0.92[EUR][1000 genomes]
rs72701637	0.96[EUR][1000 genomes]
rs72701639	0.96[EUR][1000 genomes]
rs72701642	0.96[EUR][1000 genomes]
rs72701645	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701652	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701657	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701659	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701664	0.96[EUR][1000 genomes]
rs7656675	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657847	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671176	0.98[EUR][1000 genomes]
rs7679322	0.85[EUR][1000 genomes]
rs7679808	0.90[EUR][1000 genomes]
rs7696111	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166285400	Weak transcription	HepG2	liver
2	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:166281600-166285400	Weak transcription	HMEC	breast
4	chr4:166281600-166285800	Weak transcription	Hela-S3	cervix
5	chr4:166281800-166284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:166282600-166290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:166282800-166286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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