Variant report

Variant	rs10021532
Chromosome Location	chr4:166267815-166267816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166052208..166052989-chr4:166267211..166267831,3	MCF-7	breast:
2	chr4:166260940..166262583-chr4:166265474..166268224,2	K562	blood:
3	chr4:166052342..166053351-chr4:166266832..166267864,6	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10015275	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10025377	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10031858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13106028	0.89[EUR][1000 genomes]
rs13137171	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046337	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17046351	0.89[EUR][1000 genomes]
rs17585655	0.90[EUR][1000 genomes]
rs17585739	0.94[EUR][1000 genomes]
rs28484900	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28735257	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6536909	0.92[EUR][1000 genomes]
rs6817186	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822290	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6842704	0.91[EUR][1000 genomes]
rs6846664	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6853552	0.92[EUR][1000 genomes]
rs72701627	0.92[EUR][1000 genomes]
rs72701628	0.94[EUR][1000 genomes]
rs72701629	0.94[EUR][1000 genomes]
rs72701630	0.94[EUR][1000 genomes]
rs72701632	0.96[EUR][1000 genomes]
rs72701634	0.96[EUR][1000 genomes]
rs72701636	0.96[EUR][1000 genomes]
rs72701637	0.92[EUR][1000 genomes]
rs72701639	0.92[EUR][1000 genomes]
rs72701642	0.92[EUR][1000 genomes]
rs72701645	0.92[EUR][1000 genomes]
rs72701652	0.90[EUR][1000 genomes]
rs72701657	0.92[EUR][1000 genomes]
rs72701659	0.92[EUR][1000 genomes]
rs72701664	0.92[EUR][1000 genomes]
rs7656675	0.92[EUR][1000 genomes]
rs7657847	0.92[EUR][1000 genomes]
rs7671176	0.91[EUR][1000 genomes]
rs7679322	0.88[EUR][1000 genomes]
rs7679808	0.94[EUR][1000 genomes]
rs7696111	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv2763404	chr4:166265940-166275340	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
2	chr4:166252200-166269400	Weak transcription	Gastric	stomach
3	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
5	chr4:166260600-166268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:166261400-166272600	Weak transcription	HSMMtube	muscle
7	chr4:166261600-166272800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:166262000-166268000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:166262000-166268200	Weak transcription	Fetal Lung	lung
10	chr4:166263200-166269200	Weak transcription	K562	blood
11	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
12	chr4:166263400-166272800	Weak transcription	NH-A	brain
13	chr4:166264000-166269000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:166264000-166271600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:166264000-166274600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:166264200-166274800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:166264400-166270200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:166264600-166269000	Weak transcription	Liver	Liver
19	chr4:166265200-166269000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:166265200-166269400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:166265200-166269600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:166265200-166269800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:166265200-166270000	Weak transcription	HMEC	breast
24	chr4:166265200-166271000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:166265200-166272400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:166265400-166268000	Weak transcription	HUVEC	blood vessel
27	chr4:166265400-166269400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:166265400-166269800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr4:166265400-166270000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:166267000-166272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:166267800-166268000	Enhancers	Brain Germinal Matrix	brain
32	chr4:166267800-166268000	Enhancers	Fetal Brain Male	brain
33	chr4:166267800-166269400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links