Variant report

Variant	rs72701642
Chromosome Location	chr4:166276043-166276044
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10015275	0.94[EUR][1000 genomes]
rs10021532	0.92[EUR][1000 genomes]
rs10025377	0.94[EUR][1000 genomes]
rs10031858	0.92[EUR][1000 genomes]
rs10517847	1.00[AFR][1000 genomes]
rs13106028	0.93[EUR][1000 genomes]
rs13137171	0.92[EUR][1000 genomes]
rs17046337	0.94[EUR][1000 genomes]
rs17046351	0.96[EUR][1000 genomes]
rs17489060	1.00[AFR][1000 genomes]
rs17489067	1.00[AFR][1000 genomes]
rs17585655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17585739	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17686888	1.00[AFR][1000 genomes]
rs17686918	1.00[AFR][1000 genomes]
rs17687037	1.00[AFR][1000 genomes]
rs17687250	1.00[AFR][1000 genomes]
rs28484900	0.94[EUR][1000 genomes]
rs28735257	0.94[EUR][1000 genomes]
rs4690818	1.00[AFR][1000 genomes]
rs4691194	1.00[AFR][1000 genomes]
rs4691198	1.00[AFR][1000 genomes]
rs6536909	0.96[EUR][1000 genomes]
rs6817186	0.92[EUR][1000 genomes]
rs6842704	0.98[EUR][1000 genomes]
rs6846664	0.94[EUR][1000 genomes]
rs6853552	1.00[EUR][1000 genomes]
rs72701627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72701628	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72701629	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72701630	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72701632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72701634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72701636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72701637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72701657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72701664	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72701670	1.00[AFR][1000 genomes]
rs72701672	1.00[AFR][1000 genomes]
rs72701673	1.00[AFR][1000 genomes]
rs72701675	1.00[AFR][1000 genomes]
rs72703619	1.00[AFR][1000 genomes]
rs72703624	1.00[AFR][1000 genomes]
rs72703639	1.00[AFR][1000 genomes]
rs72703653	1.00[AFR][1000 genomes]
rs72703657	1.00[AFR][1000 genomes]
rs7656675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7657847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7671176	0.98[EUR][1000 genomes]
rs7679322	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7679808	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7696111	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:166270000-166276800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:166273200-166276600	Weak transcription	HepG2	liver
4	chr4:166275400-166277000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:166275600-166277000	Weak transcription	Primary monocytes fromperipheralblood	blood

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