Variant report

Variant	rs6846664
Chromosome Location	chr4:166271662-166271663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10002711	0.89[AFR][1000 genomes]
rs10003171	0.89[AFR][1000 genomes]
rs10015275	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021532	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10024839	0.89[AFR][1000 genomes]
rs10024849	0.89[AFR][1000 genomes]
rs10024953	0.87[AFR][1000 genomes]
rs10025186	0.87[AFR][1000 genomes]
rs10025377	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031858	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10517835	0.89[AFR][1000 genomes]
rs1059209	0.89[AFR][1000 genomes]
rs1059210	0.89[AFR][1000 genomes]
rs1059212	0.89[AFR][1000 genomes]
rs1059214	0.89[AFR][1000 genomes]
rs1136537	0.89[AFR][1000 genomes]
rs13106028	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13137171	0.98[EUR][1000 genomes]
rs13918	0.89[AFR][1000 genomes]
rs17046253	0.88[AFR][1000 genomes]
rs17046259	0.87[AFR][1000 genomes]
rs17046337	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046351	0.91[EUR][1000 genomes]
rs17585655	0.92[EUR][1000 genomes]
rs17585739	0.96[EUR][1000 genomes]
rs28484900	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28491691	0.96[AFR][1000 genomes]
rs28735257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6536905	0.87[AFR][1000 genomes]
rs6536909	0.94[EUR][1000 genomes]
rs6817186	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6822290	0.81[EUR][1000 genomes]
rs6839161	0.89[AFR][1000 genomes]
rs6842704	0.92[EUR][1000 genomes]
rs6853552	0.94[EUR][1000 genomes]
rs72701627	0.94[EUR][1000 genomes]
rs72701628	0.96[EUR][1000 genomes]
rs72701629	0.96[EUR][1000 genomes]
rs72701630	0.96[EUR][1000 genomes]
rs72701632	0.98[EUR][1000 genomes]
rs72701634	0.98[EUR][1000 genomes]
rs72701636	0.98[EUR][1000 genomes]
rs72701637	0.94[EUR][1000 genomes]
rs72701639	0.94[EUR][1000 genomes]
rs72701642	0.94[EUR][1000 genomes]
rs72701645	0.94[EUR][1000 genomes]
rs72701652	0.92[EUR][1000 genomes]
rs72701657	0.94[EUR][1000 genomes]
rs72701659	0.94[EUR][1000 genomes]
rs72701664	0.94[EUR][1000 genomes]
rs7656675	0.94[EUR][1000 genomes]
rs7657847	0.94[EUR][1000 genomes]
rs7671176	0.92[EUR][1000 genomes]
rs7679322	0.90[EUR][1000 genomes]
rs7679808	0.96[EUR][1000 genomes]
rs7696111	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9308102	0.87[AFR][1000 genomes]
rs9308103	0.89[AFR][1000 genomes]
rs9997634	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv2763404	chr4:166265940-166275340	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:166261400-166272600	Weak transcription	HSMMtube	muscle
3	chr4:166261600-166272800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
5	chr4:166263400-166272800	Weak transcription	NH-A	brain
6	chr4:166264000-166274600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:166264200-166274800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:166265200-166272400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:166267000-166272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:166269800-166272200	Weak transcription	HepG2	liver
11	chr4:166270000-166276800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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